PARTIT2BED.PL(1)

💖 NAME 💖

partit2bed.pl — ok so bestie, this lil icon right here converts the output of the ChIP-Seq partitioning program to BED format ✨ like that's literally its whole job and it eats every time 💅

🌸 DESCRIPTION 🌸

So here's the vibe, fr fr:

partit2bed.pl [options] <ChIP-Part out file>

and where options are, like, all of these 👇 (yes we're going through every single one, no skipping, we don't do that here 🫶)

• -h, --help — shows you this stuff 💖 (the help text, bestie, it shows the help text)
• --db <path> — use <path> to go find the Chrom Id Storable File chro_idx.nstorage 🗂️ like that's where it lives, go get it
• -t, --track <track> — the BED track name, and the default is Test-BED 🎀
• -d, --desc <desc> — the Description field of the BED header line, defaulting to ChIP-Seq 🌸
• -n <int> — chromosome number for the BED declaration lines, and the default is 0, which means all chromosomes 👑 (0 = everyone's invited)
• -b <int> — chromosome start, default -1 = the entire chrom region 🦋
• -e <int> — chromosome end, default -1 = the entire chrom region 🦋

not me writing out every single flag with its default like a good student 💀 but also — the defaults matter, bestie, don't come for me

And yeah, the whole point, one more time for the people in the back: the program converts the output of the ChIP-Seq partitioning program to BED format ✨ iconic behaviour honestly

🫶 AUTHOR 🫶

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program 💜 like go off, use it anywhere, it's for everyone

okay that's the whole page, you're basically a partit2bed.pl expert now, no cap 🌈

partit2bed.pl version 1.5.5, dated March 2020 — mwah, that's the sign-off, love u, bye bestie 💅💖🎀