section 1 · User commands 💻

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S (continued)

sigsum-key-to-vkey(1)convert public key in OpenSSH format to vkey format✨
sigsum-key-verify(1)verify Ed25519 signature✨
sigsum-log-primary(1)Sigsum log primary✨
sigsum-log-secondary(1)Sigsum log secondary✨
sigsum-mktree(1)Sigsum make tree head✨
sigsum-monitor(1)discover signed checksums for one or more keys✨
sigsum-policy(1)list and show available named policies✨
sigsum-policy-list(1)list available named policies✨
sigsum-policy-show(1)show contents of given named policy✨
sigsum-submit(1)sign and log checksums✨
sigsum-token(1)DNS configuration and rate-limit tokens✨
sigsum-token-create(1)create rate-limit token✨
sigsum-token-record(1)format rate-limit key as a TXT record✨
sigsum-token-verify(1)verify rate-limit token✨
sigsum-verify(1)enforce public logging✨
sigsum-witness(1)provide service for cosigning a sigsum log✨
sigtool(1)signature and database management tool✨
sigul(1)A client for accessing a signing server✨
sigul-pesign-bridge(1)An alternative to the pesign daemon interface✨
sigul_setup_client(1)Set up a sigul client✨
sigviewer(1)a viewing and scoring tools for biomedical signals.✨
silan(1)Soundfile Silence Analyzer✨
sile(1)The SILE Typesetter reads input file(s) and typesets the content into a rendered document format, typically PDF✨
sile-lua(1)Simon’s Improved Layout Engine✨
silent(1e)Find restriction sites to insert (mutate) with no translation change✨
silentjack(1)silence detector for the JACK audio system✨
silkaj(1)command-line client for Duniter✨
silverjuke(1)Play and organize your music✨
silx(1)This module describe silx applications which are available through the silx launcher.✨
sim-torch(1)A simulated plasma torch✨
sim2gff(1)Converts SIM file into GFF formatted records✨
sim2trad(1)clipboard data conversion for traditional Chinese and simplified Chinese✨
sim4(1)align an expressed DNA sequence with a genomic sequence✨
sim4db(1)batch spliced alignment of cDNA sequences to a target genome✨
sim4dbutils(1)utilities to work with sim4db-generated alignment files convertPolishes - convert between sim4db and GFF3 formats filterPolishes - filter alignments based on sequence identity, coverage and length…✨
sim_8086(1)find similarities in C, Java, Pascal, Modula-2, Lisp, Miranda, 8086 assembler code or in text files✨
sim_c(1)find similarities in C, Java, Pascal, Modula-2, Lisp, Miranda, 8086 assembler code or in text files✨
sim_c++(1)find similarities in C, Java, Pascal, Modula-2, Lisp, Miranda, 8086 assembler code or in text files✨
sim_java(1)find similarities in C, Java, Pascal, Modula-2, Lisp, Miranda, 8086 assembler code or in text files✨
sim_lisp(1)find similarities in C, Java, Pascal, Modula-2, Lisp, Miranda, 8086 assembler code or in text files✨
sim_lsmplugin(1)LibStorageMgmt simulator python plugin✨
sim_m2(1)find similarities in C, Java, Pascal, Modula-2, Lisp, Miranda, 8086 assembler code or in text files✨
sim_mira(1)find similarities in C, Java, Pascal, Modula-2, Lisp, Miranda, 8086 assembler code or in text files✨
sim_pasc(1)find similarities in C, Java, Pascal, Modula-2, Lisp, Miranda, 8086 assembler code or in text files✨
sim_pin(1)GUI for displaying and setting one or more HAL inputs✨
sim_reads(1)Convert Fastq sequences to Fasta sequences.✨
sim_reads_tran(1)Simulate sequencing reads from transcripts references and expression level profile.✨
sim_text(1)find similarities in C, Java, Pascal, Modula-2, Lisp, Miranda, 8086 assembler code or in text files✨
simarrange(1)STL 2D plate packer with collision simulation✨
simavr(1)lean and mean AVR simulator✨
simc_lsmplugin(1)LibstorageMgmt Simulator C Plugin✨
simcrs(1)C++ Simulated Travel-Oriented Distribution System Library✨
simcrs-config(1)Configuration Script for the C++ Simulated Travel- Oriented Distribution System Library✨
simfqt(1)Command-line interpreter for the C++ Simulated Fare Quote System Library✨
simfqt-config(1)Configuration Script for the C++ Simulated Fare Quote System Library✨
simfqt_parseFareRules(1)Binary executable for the C++ Simulated Fare Quote System Library✨
simgrid_update_xml(1)updates SimGrid XML files to latest version✨
simhash(1)file similarity hash tool✨
similarity-tester(1)find similarities in C, Java, Pascal, Modula-2, Lisp, Miranda, 8086 assembler code or in text files✨
simka(1)comparative metagenomics method dedicated to NGS datasets✨
simkaCount(1)comparative metagenomics method dedicated to NGS datasets✨
simkaCountProcess(1)comparative metagenomics method dedicated to NGS datasets✨
simkaMerge(1)comparative metagenomics method dedicated to NGS datasets✨
simkaMin(1)comparative metagenomics method dedicated to NGS datasets✨
simkaMin_update(1)comparative metagenomics method dedicated to NGS datasets✨
simkaMinCore(1)comparative metagenomics method dedicated to NGS datasets✨
simpal.pl(1)proof of concept✨
simple(1)the obvious array-based kmer counter✨
simple-cdd(1)create custom debian-installer images✨
simple-image-filter(1)Image Filter✨
simple-mtpfs(1)filesystem driver for MTP based devices✨
simple-pitchmark(1)Programs for audio and speech manipulation✨
simple-scan(1)Scanning utility✨
simple-websocket(1)simple-websocket Simple WebSocket server and client for Python.✨
simple2zoom(1p)generic Swiss Army Server for proxying between IR standards✨
simple_pacs(1)Generic CTN manual page✨
simple_storage(1)Generic CTN manual page✨
SimpleAgenda(1)calendar manager for GNUstep✨
simplebackup(1)do a simple backup of your data✨
simpleCoalParcelFoam(1)part of OpenFOAM (The Open Source CFD Toolbox).✨
simpleFoam(1)part of OpenFOAM (The Open Source CFD Toolbox).✨
simpleftp(1)Rudimentary FTP and HTTP(S) client✨
simplegraph.pl(1)Provides dotplot/chaos style plot of murasaki alignments✨
simplemonitor(1)Monitor hosts status and network connectivity✨
simpleproxy(1)Simple tcp socket proxy✨
simpleReactingParcelFoam(1)part of OpenFOAM (The Open Source CFD Toolbox).✨
simplescreenrecorder(1)A feature-rich screen recorder that supports X11 and OpenGL.✨
SimpleSearchEngine(1)library for LC/MS data management and analysis - tools✨
simpleSprayFoam(1)part of OpenFOAM (The Open Source CFD Toolbox).✨
simplevisor(1)simple daemons supervisor✨
simplevisor-control(1)run simplevisor as a service✨
simplevisor-loop(1)execute the given command in a loop✨
simplify(1)a script to simplify a MIME message✨
simplyhtml(1)A Java editor based on HTML and CSS.✨
simpos(1)Find position of a named object in the sky✨
simrisc(1)This program performs simulations in the context of breast and lung cancer✨
simstring(1)build database and find similar words✨
simul-beacons(1)Robot dataset simulator✨
simul-gridmap(1)Robot dataset simulator from a gridmap and a predefined robot path✨
simul-landmarks(1)Robot dataset simulator✨
simulate_probe(1)simulate a probe input✨
simulide(1)electrnic circuit simulator✨
simulpic(1)Microchip PIC 16F84 simulator✨
since(1)display content of a file since the last time✨
sindex(1)index a sequence database for sfetch✨
sinfo(1)View information about Slurm nodes and partitions.✨
sinfo-client(1)a monitoring tool for networked computers (client)✨
sinfo-emulator(1)client programs to emulate the SLURM (Simple Linux Utility for Resource Management), an open-source cluster resource management and job scheduling.✨
singleCellMesh(1)part of OpenFOAM (The Open Source CFD Toolbox).✨
singledelta(1)heuristic minimizer of interesting files✨
Singular(1)manual page for Singular for version 4.x.x✨
singular(1)convert English plurals to singular✨
singularity(1)Linux container platform optimized for High Performance Computing (HPC) and Enterprise Performance Computing (EPC)✨
singularity-build(1)Build an Apptainer image✨
singularity-cache(1)Manage the local cache✨
singularity-cache-clean(1)Clean your local Apptainer cache✨
singularity-cache-list(1)List your local Apptainer cache✨
singularity-capability(1)Manage Linux capabilities for users and groups✨
singularity-capability-add(1)Add capabilities to a user or group (requires root)✨
singularity-capability-avail(1)Show description for available capabilities✨
singularity-capability-drop(1)Remove capabilities from a user or group (requires root)✨
singularity-capability-list(1)Show capabilities for a given user or group✨
singularity-checkpoint(1)Manage container checkpoint state (experimental)✨
singularity-checkpoint-create(1)Create empty checkpoint storage (experimental)✨
singularity-checkpoint-delete(1)Delete a checkpoint (experimental)✨
singularity-checkpoint-instance(1)Checkpoint the state of a running instance (experimental)✨
singularity-checkpoint-list(1)List local checkpoints (experimental)✨
singularity-config(1)Manage various apptainer configuration (root user only)✨
singularity-config-fakeroot(1)Manage fakeroot user mappings entries (root user only)✨
singularity-config-global(1)Edit apptainer.conf from command line (root user only or unprivileged installation)✨
singularity-data(1)Manage an OCI-SIF data container✨
singularity-data-package(1)Package a file or directory into a data container✨
singularity-delete(1)Deletes requested image from the library✨
singularity-exec(1)Run a command within a container✨
singularity-inspect(1)Show metadata for an image✨
singularity-instance(1)Manage containers running as services✨
singularity-instance-list(1)List all running and named Apptainer instances✨
singularity-instance-run(1)Run a named instance of the given container image✨
singularity-instance-start(1)Start a named instance of the given container image✨
singularity-instance-stats(1)Get stats for a named instance✨
singularity-instance-stop(1)Stop a named instance of a given container image✨
singularity-key(1)Manage OpenPGP keys✨
singularity-key-export(1)Export a public or private key into a specific file✨
singularity-key-generate-cosign-key-pair(1)Generate a new cosign key- pair✨
singularity-key-import(1)Import a local key into the local or global keyring✨
singularity-key-list(1)List keys in your local or in the global keyring✨
singularity-key-newpair(1)Create a new key pair✨
singularity-key-pull(1)Download a public key from a key server✨
singularity-key-push(1)Upload a public key to a key server✨
singularity-key-remove(1)Remove a local public key from your local or the global keyring✨
singularity-key-search(1)Search for keys on a key server✨
singularity-keyserver(1)Manage apptainer keyservers✨
singularity-keyserver-add(1)Add a keyserver (root user only)✨
singularity-keyserver-list(1)List all keyservers that are configured✨
singularity-keyserver-login(1)Login to a keyserver✨
singularity-keyserver-logout(1)Logout from a keyserver✨
singularity-keyserver-remove(1)Remove a keyserver (root user only)✨
singularity-oci(1)Manage OCI containers✨
singularity-oci-attach(1)Attach console to a running container process (root user only)✨
singularity-oci-create(1)Create a container from a bundle directory (root user only)✨
singularity-oci-delete(1)Delete container (root user only)✨
singularity-oci-exec(1)Execute a command within container (root user only)✨
singularity-oci-kill(1)Kill a container (root user only)✨
singularity-oci-mount(1)Mount create an OCI bundle from SIF image (root user only)✨
singularity-oci-pause(1)Suspends all processes inside the container (root user only)✨
singularity-oci-resume(1)Resumes all processes previously paused inside the container (root user only)✨
singularity-oci-run(1)Create/start/attach/delete a container from a bundle directory (root user only)✨
singularity-oci-start(1)Start container process (root user only)✨
singularity-oci-state(1)Query state of a container (root user only)✨
singularity-oci-umount(1)Umount delete bundle (root user only)✨
singularity-oci-update(1)Update container cgroups resources (root user only)✨
singularity-overlay(1)Manage an EXT3 writable overlay image✨
singularity-overlay-create(1)Create EXT3 writable overlay image✨
singularity-overlay-seal(1)Seal a writable overlay, into a read-only layer.✨
singularity-overlay-sync(1)Sync OCI-SIF manifest & config with overlay content✨
singularity-plugin(1)Manage Apptainer plugins✨
singularity-plugin-compile(1)Compile an Apptainer plugin✨
singularity-plugin-create(1)Create a plugin skeleton directory✨
singularity-plugin-disable(1)disable an installed Apptainer plugin✨
singularity-plugin-enable(1)Enable an installed Apptainer plugin✨
singularity-plugin-inspect(1)Inspect an Apptainer plugin (either an installed one or an image)✨
singularity-plugin-install(1)Install a compiled Apptainer plugin✨
singularity-plugin-list(1)List installed Apptainer plugins✨
singularity-plugin-uninstall(1)Uninstall removes the named plugin from the system✨
singularity-pull(1)Pull an image from a URI✨
singularity-push(1)Upload image to the provided URI✨
singularity-registry(1)Manage authentication to OCI/Docker registries✨
singularity-registry-list(1)List all OCI credentials that are configured✨
singularity-registry-login(1)Login to an OCI/Docker registry✨
singularity-registry-logout(1)Logout from an OCI/Docker registry✨
singularity-remote(1)Manage apptainer remote endpoints✨
singularity-remote-add(1)Add a new apptainer remote endpoint✨
singularity-remote-get-login-password(1)Retrieves the cli secret for the current logged in user✨
singularity-remote-list(1)List all apptainer remote endpoints that are configured✨
singularity-remote-login(1)Login to an apptainer remote endpoint✨
singularity-remote-logout(1)Log out from an apptainer remote endpoint✨
singularity-remote-remove(1)Remove an existing apptainer remote endpoint✨
singularity-remote-status(1)Check the status of the apptainer services at an endpoint, and your authentication token✨
singularity-remote-use(1)Set an Apptainer remote endpoint to be actively used✨
singularity-run(1)Run the user-defined default command within a container✨