SIM_READS(1)

📦 version 1.1.3, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 SIM_READS(1) 💖

okay bestie, welcome to the User Commands section of the manual, this one's sim_reads(1) and it's genuinely such a fun lil tool. pull up a chair, grab a boba, let's get into it 🧋✨

✨ NAME ✨

sim_reads — Convert Fastq sequences to Fasta sequences.

🌸 SYNOPSIS 🌸

sim_reads ref.fa reads.fa

🦋 DESCRIPTION 🦋

sim_reads — Simulate sequencing reads from references.

no cap, that's the whole vibe. you hand it a reference, it hands you back reads. iconic behaviour honestly 💅

🎀 Allowed Options: 🎀

  • **--depth arg (=30)** — sequencing depth of the sample. default is 30`, she's giving standard coverage energy.
  • **--error_rate arg (=0.01)** — error rate. defaults to 0.01`, so like, a lil bit of chaos on purpose 🙈
  • **--read_length arg (=100)** — read length. default 100`, short and sweet fr fr.
  • --paired — if paired-end. flip this on when you want the paired-end moment 👑
  • **--sd arg (=-1)** — sd. that's standard deviation bestie, and she defaults to -1`.
  • **--insert_distance arg (=500)** — insert distance. default 500`, lowkey a whole journey.
  • --print_correct — output correct reads. turn this on if you want the good ones printed out too, slay.

👑 AUTHOR 👑

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

and that's the whole page, bestie!! 🌈 this one's sim_reads version 1.1.3, dated March 2020, hanging out in the User Commands section of the manual. go forth and simulate, you absolute main character 🫶💜

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