section 1 · User commands 💻

68502 pages · page 20 of 343

B (continued)

bamsplitdiv(1)split BAM file into a set of BAM files✨
bamstreamingmarkduplicates(1)mark duplicate reads✨
bamtagconversion(1)convert old tags to new ones✨
bamtofastq(1)convert SAM, BAM or CRAM files to FastQ✨
bamtofastq.py(1)Convert a coordinate sorted BAM file to FASTQ✨
bamtools(1)toolkit for manipulating BAM (genome alignment) files✨
bamvalidate(1)validate BAM file✨
bamview(1)visualizing genome sequencing read alignment stored in BAM files✨
bamzztoname(1)move the rank of an alignment stored as an auxiliary field to the alignments name✨
banana(1e)Plot bending and curvature data for B-DNA✨
Bandage(1)Bioinformatics Application for Navigating De novo Assembly Graphs Easily✨
bandit(1)Security oriented static analyzer for python code✨
bandwhich(1)✨
banner(1)print large banner✨
banner(1ppt)print large banner on printer✨
Banner(1x)the AfterStep Logo module✨
bannergrab(1)a network service banner grabbing tool✨
bao(1)securely access secrets✨
baobab(1)A graphical disk usage analyzer for the GNOME desktop✨
bar(1)show information about a data transfer✨
barcode(1)a standalone program to convert text strings to printed bars✨
Barcode_split(1)simple tool to split sequencing summary report in per barcodes✨
bardecode(1)barcode recognition tool of the ExactImage toolkit✨
barebox-state(1)Manage Barebox's state in a device tree✨
barectf(1)Generate C99 code that can write native CTF packets✨
bareos-tray-monitor(1)Bareos's 'System Tray' monitor✨
baresip(1)portable and modular command-line SIP user-agent✨
barman(1)Barman Commands Barman has a command-line interface named barman, which is used basically to interact with Barman's backend. Before jumping into each of the sub-commands of barman, be aware that…✨
barman-archive-wal(1)Barman Sub-Commands✨
barman-backup(1)Barman Sub-Commands✨
barman-check(1)Barman Sub-Commands✨
barman-check-backup(1)Barman Sub-Commands✨
barman-cloud-backup(1)Barman-cloud Commands Synopsis barman-cloud-backup [ { -V | --version } ] [ --help ] [ { { -v | --verbose } | { -q | --quiet } } ] [ { -t | --test } ] [ --cloud-provider { aws-s3 | azure-blob-storage…✨
barman-cloud-backup-delete(1)Barman-cloud Commands Synopsis barman-cloud-backup-delete [ { -V | --version } ] [ --help ] [ { { -v | --verbose } | { -q | --quiet } } ] [ { -t | --test } ] [ --cloud-provider { aws-s3 |…✨
barman-cloud-backup-keep(1)Barman-cloud Commands Synopsis barman-cloud-backup-keep [ { -V | --version } ] [ --help ] [ { { -v | --verbose } | { -q | --quiet } } ] [ { -t | --test } ] [ --cloud-provider { aws-s3 |…✨
barman-cloud-backup-list(1)Barman-cloud Commands Synopsis barman-cloud-backup-list [ { -V | --version } ] [ --help ] [ { { -v | --verbose } | { -q | --quiet } } ] [ { -t | --test } ] [ --cloud-provider { aws-s3 |…✨
barman-cloud-backup-show(1)Barman-cloud Commands Synopsis barman-cloud-backup-show [ { -V | --version } ] [ --help ] [ { { -v | --verbose } | { -q | --quiet } } ] [ { -t | --test } ] [ --cloud-provider { aws-s3 |…✨
barman-cloud-check-wal-archive(1)Barman-cloud Commands Synopsis barman-cloud-check-wal-archive [ { -V | --version } ] [ --help ] [ { { -v | --verbose } | { -q | --quiet } } ] [ { -t | --test } ] [ --cloud-provider { aws-s3 |…✨
barman-cloud-restore(1)Barman-cloud Commands Synopsis barman-cloud-restore [ { -V | --version } ] [ --help ] [ { { -v | --verbose } | { -q | --quiet } } ] [ { -t | --test } ] [ --cloud-provider { aws-s3 |…✨
barman-cloud-wal-archive(1)Barman-cloud Commands Synopsis barman-cloud-wal-archive [ { -V | --version } ] [ --help ] [ { { -v | --verbose } | { -q | --quiet } } ] [ { -t | --test } ] [ --cloud-provider { aws-s3 |…✨
barman-cloud-wal-restore(1)Barman-cloud Commands Synopsis barman-cloud-wal-restore [ { -V | --version } ] [ --help ] [ { { -v | --verbose } | { -q | --quiet } } ] [ { -t | --test } ] [ --cloud-provider { aws-s3 |…✨
barman-config-switch(1)Barman Sub-Commands✨
barman-config-update(1)Barman Sub-Commands✨
barman-cron(1)Barman Sub-Commands✨
barman-delete(1)Barman Sub-Commands✨
barman-diagnose(1)Barman Sub-Commands✨
barman-generate-manifest(1)Barman Sub-Commands✨
barman-get-wal(1)Barman Sub-Commands✨
barman-keep(1)Barman Sub-Commands✨
barman-list-backups(1)Barman Sub-Commands✨
barman-list-files(1)Barman Sub-Commands✨
barman-list-processes(1)Barman Sub-Commands✨
barman-list-servers(1)Barman Sub-Commands✨
barman-list_backups(1)Barman Sub-Commands✨
barman-lock-directory-cleanup(1)Barman Sub-Commands✨
barman-put-wal(1)Barman Sub-Commands✨
barman-rebuild-xlogdb(1)Barman Sub-Commands✨
barman-receive-wal(1)Barman Sub-Commands✨
barman-recover(1)Barman Sub-Commands Note: This command is deprecated. Use the barman restore <# commands-barman-restore> command instead.✨
barman-replication-status(1)Barman Sub-Commands✨
barman-restore(1)Barman Sub-Commands✨
barman-show-backup(1)Barman Sub-Commands✨
barman-show-servers(1)Barman Sub-Commands✨
barman-status(1)Barman Sub-Commands✨
barman-switch-wal(1)Barman Sub-Commands✨
barman-switch-xlog(1)Barman Sub-Commands✨
barman-sync-backup(1)Barman Sub-Commands✨
barman-sync-info(1)Barman Sub-Commands✨
barman-sync-wals(1)Barman Sub-Commands✨
barman-terminate-process(1)Barman Sub-Commands✨
barman-verify(1)Barman Sub-Commands✨
barman-verify-backup(1)Barman Sub-Commands✨
barman-wal-archive(1)Barman-cli Commands✨
barman-wal-restore(1)Barman-cli Commands✨
barnowl(1)tty‐based zephyr client✨
barrierc(1)Barrier Keyboard/Mouse Client✨
barriers(1)Barrier Keyboard/Mouse Server✨
barrnap(1)Predict location of ribosomal RNA genes in genomes✨
barry(1)A fullblown Standard ML compiler✨
bart(1)Berkeley Advanced Reconstruction Toolbox✨
Base(1x)essential AfterStep configuration options✨
base16(1)base 16/32/64 encode/decode data to standard output✨
base16384(1)Encode binary files to printable utf16be✨
base32(1)base32 encode/decode data and print to standard output✨
base32hex(1)base 16/32/64 encode/decode data to standard output✨
base32plain(1)base 16/32/64 encode/decode data to standard output✨
base58(1)Base58 encode or decode✨
base64(1)base64 encode/decode data and print to standard output✨
base64(1ppt)encode and decode base64 data✨
base64mime(1)base 16/32/64 encode/decode data to standard output✨
base64pem(1)base 16/32/64 encode/decode data to standard output✨
base64plain(1)base 16/32/64 encode/decode data to standard output✨
base64url(1)base 16/32/64 encode/decode data to standard output✨
base85(1)Encode and decode BASE85 representations of files✨
base91(1)basE91 encode or decode FILE, or standard input, to standard output✨
base_evolve(1)Produce a synthetic alignment by simulating evolution according to✨
BaselineFilter(1)library for LC/MS data management and analysis - tools✨
basename(1)strip directory and suffix from filenames✨
basename(1b)(BSD) return non-directory portion of a pathname✨
basename(1p)return non-directory portion of a pathname✨
basename(1plan9)strip file name affixes✨
basename(1posix)return non-directory portion of a pathname✨
basename(1ppt)remove directory and suffix from filenames✨
basenc(1)Encode/decode data and print to standard output✨
basepods(1)print out pod paths for the standard perl manpages✨
basepods(1p)print out pod paths for the standard perl manpages✨
basex(1)XML database system and XPath/XQuery processor (command line mode)✨
basexclient(1)XML database system and XPath/XQuery processor (client mode)✨
basexgui(1)XML database system and XPath/XQuery processor (graphical mode)✨
basexserver(1)XML database system and XPath/XQuery processor (server mode)✨
basez(1)base 16/32/64 encode/decode data to standard output✨
bash(1)GNU Bourne-Again SHell✨
bash-snippets(1)A collection of small bash scripts for heavy terminal users✨
bash-static(1)GNU Bourne-Again SHell✨
bash_unit(1)bash unit testing enterprise edition framework for professionals!✨
bashacks(1)collection of useful bash functions for programmers✨
bashbro(1)A Bash-based web file browser✨
bashbug(1)report a bug in bash✨
bashbug-64(1)report a bug in bash✨
bashburn(1)✨
bashcards(1)practice flashcards in bash✨
bashdb(1)bash debugger script✨
bashmount(1)tool to mount and unmount removable media✨
bashrun(1)X11 application launcher based on bash✨
bashrun2(1)launch applications from interactive bash sessions✨
bashtop(1)Resource monitor that shows usage and stats✨
basic256(1)Educational BASIC programming environment for children✨
basictopvf(1)utilities to convert various sound formats✨
BasiliskII(1)a 68k Macintosh emulator✨
BasiliskII-jit(1)a 68k Macintosh emulator✨
BasiliskII-nojit(1)a 68k Macintosh emulator✨
basis(1rheolef)plot a finite element basis (rheolef-7.2)✨
basix-config(1)Get information about basix✨
basket(1)Note-taking application✨
BasketLosses(1)Example of Modeling Losses Across Correlated Assets✨
basl2c(1)converts a BASL (BAtch Scheduling Language) code into a C scheduler code.✨
bat(1)a cat(1) clone with syntax highlighting and Git integration.✨
bat2gts(1)takes a bathymetry file (three columns: longitude, latitude (degree), depth (meters)) and generates a GTS depth file for the given domain.✨
batcat(1)a cat(1) clone with syntax highlighting and Git integration.✨
batch(1)queue, examine, or delete jobs for later execution✨
batch(1p)schedule commands to be executed in a batch queue✨
batch(1posix)schedule commands to be executed in a batch queue✨
batch_crop(1)crop a set of images✨
batch_image_convert(1)use VIPS to convert a set of images to a new type✨
batch_rubber_sheet(1)warp a set of images with a rubber-sheet transformation✨
batdiff(1)Diff a file against the current git index, or display the diff between two files.✨
batgrep(1)Quickly search through and highlight files using ripgrep.✨
batman(1)Read system manual pages (man) using bat as the manual page formatter.✨
batmon(1)Battery monitor for GNUstep✨
batpipe(1)A less (and bat) preprocessor for viewing more types of files in the terminal.✨
bats(1)Bash Automated Testing System✨
batsignal(1)battery monitor daemon✨
battery-graph(1)Show a graph of the battery charge✨
battery-log(1)Extract battery statistics✨
batticonplus(1)a lightweight and fast battery icon that sits in your system tray✨
batwatch(1)Watch for changes in files or command output, and print them with bat.✨
bayesol(1)a Bayes solution calculator for use with dbacl.✨
bazaar(1)New Flatpak App Store with Adwaita and GTK4✨
bazaar-dl-worker(1)Download worker process for Bazaar package manager✨
bazel(1)tool to automate software builds and tests✨
bazel-3(1)tool to automate software builds and tests✨
bazel-4(1)tool to automate software builds and tests✨
bb(1)The aalib demo✨
bbAnalyze(1)part of mauveAligner package alignmentProjector - part of mauveAligner package backbone_global_to_local - part of mauveAligner package bbAnalyze - part of mauveAligner package createBackboneMFA -…✨
bbcheck(1)run automated tests on BitBabbler hardware RNG devices✨
bbcnews(1sr)surfraw(1) search tools✨
bbctl(1)query and control tool for BitBabbler hardware RNG devices✨
bbduk.sh(1)Filters, trims, or masks reads with kmer matches to an artifact/contaminant file✨
bbe(1)binary block editor✨
bbFilter(1)this is a part of mauveAligner package✨
bbkeys(1)a general XWindow keygrabber✨
bbl2bib(1)convert thebibliography environment to a bib file✨
bbl2bib(1texmf-dist)convert thebibliography environment to a bib file✨
bbmail(1)mailbox flag for X✨
bbmap.sh(1)Fast and accurate splice-aware read aligner.✨
bbnorm.sh(1)Kmer-based error-correction and normalization tool✨
bbox(1)prints out the bounding box of a rawppm or rawpbm image✨
bbox(1texmf-dist)prints out the bounding box of a rawppm or rawpbm image✨
bboxx(1)The program outputs the page number and the Bounding Box parameters for every page in the file filename, by postprocessing the output from the gs bbox device.✨
bbpager(1)pager for the Blackbox window manager✨
bbpb(1)decode and encode Protocol Buffer messages without a .proto definition✨
bbrun(1)An elegant tool for the Blackbox window manager that runs commands✨
bbtime(1)Display the time in a small blackbox style window✨
bbvirt(1)hotplug BitBabbler devices into libvirt managed domains✨
bc(1)An arbitrary precision calculator language✨
bc(1p)arbitrary-precision arithmetic language✨
bc(1plan9)arbitrary-precision arithmetic language✨
bc(1posix)arbitrary-precision arithmetic language✨
bc(1ppt)an arbitrary precision calculator language✨
bc-howard(1)arbitrary-precision decimal arithmetic language and calculator✨
bcal(1)Storage expression calculator.✨
bcalm(1)de Bruijn compaction in low memory✨
bcat(1)Programs for audio and speech manipulation✨
bcc(1)Bruce's C compiler✨
bcd(1ppt)format input as punch cards✨
bcftools(1)utilities for variant calling and manipulating VCFs and BCFs.✨
bch(1)open the debian/changelog in sensible editor, appending a line showing the current files that have been modified✨
bchunk(1)CD image format conversion from bin/cue to iso/cdr✨
bcm43xx-fwcutter(1)manual page for bcm43xx-fwcutter✨
bCNC(1)GRBL CNC command sender, autoleveler and g-code editor✨