BBFILTER(1)

📦 version 1.2.0+4713, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

✨ NAME ✨

okay so bestie, this is BBFILTER(1) 💖 from the User Commands section, the manual for bbFilter — and yes, this is a part of the mauveAligner package. That's the whole NAME moment. 🫶

💅 DESCRIPTION 💅

Here's the command shape, the whole main-character usage:

bbFilter <backbone file> <independent dist> <output file> <beast|gp>
[<seq1> <seq2>...<seqN>]

And the tiny-but-huge detail: seq index starts at 0. ✨

🎀 EXAMPLES 🎀

🌸 Example 🌸

okay so run this:

bbFilter my_alignment.backbone 50 my_feats.bin gp

the above command extracts binary features from "my_alignment.backbone" which are separated by a minimum of 50nt sequence conserved among all taxa in the alignment. The output is written to my_feats.bin in genoplast format. Slay. 💅

🦋 Example 2 🦋

and then this one, because we contain multitudes:

bbFilter aln.backbone 100 feats.xml beast 0 1 2 5 6

the above command extracts binary features from "aln.backbone" which are separated by a minimum of 100nt sequence conserved among genomes 0,1,2,5, and 6 from the alignment. The output is written to feats.xml in beast format. Iconic. 🔥

bbFilter 1.2.0+4713 — April 2015 — BBFILTER(1) ... that's the source/version/date sign-off, bestie. Mwah, bye. 💖

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