section 1 · User commands 💻

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C (continued)

codonw-raau(1)calculate Relative Amino Acid Usage (RAAU)✨
codonw-reader(1)output sequence in reader format✨
codonw-rscu(1)calculate Relative Synonymous Codon Usage (RSCU)✨
codonw-tidy(1)clean up sequence in FASTA format✨
codonw-transl(1)conceptual translation of DNA to amino acid✨
codxyz2fract(1)take an XYZ format [1] molecular file and convert orthogonal coordinates to fractional ones. Unit cell constants can be given as command line option parameters. [1]…✨
codxyz2ortho(1)take an XYZ format [1] molecular file and convert coordinates to orthogonal ones (assuming that they were fractional in the original file). Unit cell constants can be given as command line option…✨
coffee(1)interpreter and compiler for the CoffeeScript language✨
cog(1)single-window web browser✨
cog-bump(1)Commit changelog from latest tag to HEAD and create new tag✨
cog-changelog(1)Display a changelog for the given commit oid range✨
cog-check(1)Verify all commit messages against the conventional commit specification✨
cog-commit(1)Create a new conventional commit✨
cog-edit(1)Interactively rename invalid commit messages✨
cog-generate-completions(1)Generate shell completions✨
cog-get-version(1)Get current version✨
cog-init(1)Install cog config files✨
cog-install-hook(1)Add git hooks to the repository✨
cog-log(1)Like git log but for conventional commits✨
cog-verify(1)Verify a single commit message✨
cogctl(1)tool to control a running Cog instance✨
cohomcalg(1)sheaf cohomology of line bundles on toric varieties✨
coil(1)generate a coil as a BRL-CAD pipe primitive✨
coils-wrap(1)runs ncoils three times to give you a three-window output✨
coin-config(1coin2)Display Coin Library Configuration✨
coin-config(1coin3)Display Coin Library Configuration✨
coinst(1)computes the co-installability kernel of a package repostory✨
coinst-upgrades(1)finding upgrade issues between to versions of a Debian distribution✨
coinst_viewer(1)view co-installability kernel generated by coinst for X✨
col(1)filter reverse line feeds from input✨
col(1ppt)filter reverse line feeds from input✨
col1(1)awk and print a column (based on the name of the program, 1-9)✨
col2(1)awk and print a column (based on the name of the program, 1-9)✨
col3(1)awk and print a column (based on the name of the program, 1-9)✨
col4(1)awk and print a column (based on the name of the program, 1-9)✨
col5(1)awk and print a column (based on the name of the program, 1-9)✨
col6(1)awk and print a column (based on the name of the program, 1-9)✨
col7(1)awk and print a column (based on the name of the program, 1-9)✨
col8(1)awk and print a column (based on the name of the program, 1-9)✨
col9(1)awk and print a column (based on the name of the program, 1-9)✨
col_util(1)colour utilities including plots and blends✨
cola(1)The highly caffeinated Git GUI✨
colcrt(1)filter nroff output for CRT previewing✨
coldEngineFoam(1)part of OpenFOAM (The Open Source CFD Toolbox).✨
colibri2(1)✨
collapse_partials(1)Collection of tools to annotate genomes using long read transcriptomics data✨
collapseEdges(1)part of OpenFOAM (The Open Source CFD Toolbox).✨
CollapseSeq.py(1)emoves duplicate sequences from FASTA/FASTQ files✨
collateindex.pl(1)generate DocBook index files✨
collatinus(1)programma ad latinam morphologiam et lemmata extrahenda✨
colldef(1)convert collation sequence source definition✨
collect-hwids(1)Tool to collect CHIDs from a running system✨
collectd(1)System statistics collection daemon✨
collectd-nagios(1)Nagios plugin for querying collectd✨
collectd-snmp-probe-host(1)Find out what information an SNMP device provides.✨
collectd-tg(1)Traffic generator for collectd.✨
collectdctl(1)Control interface for collectd✨
collectdmon(1)Monitoring daemon for collectd✨
collectiongain(1)large scale Replay Gain calculating tool✨
collectl(1)Collects data that describes the current system status.✨
collectl2pcp(1)import collectl data to a PCP archive✨
collink(1)Link ICC profiles.✨
colmap(1)Structure-from-Motion and Multi-View Stereo✨
colmux(1)multiplex communications to multiple systems running collectl from a single system✨
colon(1p)null utility✨
colon(1posix)null utility✨
color-chrs.pl(1)Plot output of "bcftools +color-chrs"✨
color-picker(1)powerful screen color picker based on Qt.✨
color_matrix(1p)a matrix of available colors from Term::ExtendedColor✨
colordiff(1)a tool to colorize diff output✨
colordiff-git(1)a tool to colorize diff output✨
colored_dmesg(1p)colorize the dmesg output✨
colorfg(1p)color each line of input according to spec✨
colorfire(1)Color-fire-explosion-thing-effect.✨
colorhug-backlight(1)Backlight utility for the ColorHug colorimeter✨
colorhug-ccmx(1)CCMX loader for the ColorHug colorimeter✨
colorhug-cmd(1)A command line utlity for the ColorHug colorimeter✨
colorhug-flash(1)A firmware updater for the ColorHug colorimeter✨
colorhug-refresh(1)Display analyzer using the ColorHug colorimeter✨
colorit(1)a script for markuping the text input✨
colorize(1)show differences between files using color graphics✨
colorless(1)enable colorised command output and pipe it to less✨
colorls(1)list directory contents with colors and icons✨
colormake(1)color wrapper for make(1)✨
colormake-short(1)color wrapper for make(1)✨
colormap(1)collection of useful tools for Allegro 4 developers✨
colormgr(1)Color Manager Testing Tool✨
colors(1)display color map✨
ColorScheme(1x)defines color values for standard set of internal color names, to be used in other configuration files✨
colorscript(1)run various shell color scripts✨
colortail(1)log colorizer that makes log checking easier✨
colortest-16(1)Display ASCII color test graph✨
colortest-16b(1)Display ASCII color test graph✨
colortest-256(1)Display ASCII color test graph✨
colortest-8(1)Display ASCII color test graph✨
colortest-python(1)Display color test chart and convert between color values✨
colplot(1)plots collectl data using gnuplot✨
colprof(1)Create ICC profile.✨
colrm(1)remove columns from a file✨
colrm(1ppt)remove columns from a file✨
column(1)columnate lists✨
columns(1)Columnize Input Text✨
colverify(1)Verify CIE values.✨
com.github.alecaddd.sequeler(1)SQL client built in Vala and Gtk✨
com.github.babluboy.bookworm(1)bookworm✨
com.github.phase1geo.minder(1)Mind-mapping application✨
com.github.tchx84.Flatseal(1)Manage Flatpak permissions✨
com.github.tkashkin.gamehub(1)Unified library for games from multiple sources✨
comb(1)combine SCCS deltas✨
combig.pl(1)Combine frequency counts to determine co-occurrence✨
combine(1)combine sets of lines from two files using boolean operations✨
combine-dmk(1)Tools for handling DMK disk image files✨
combine-uid-lists(1)merge numerical lists✨
combine_lang_model(1)generate starter traineddata✨
combine_tessdata(1)combine/extract/overwrite/list/compact Tesseract data✨
combine_tradis_plots(1p)Combine multiple plotfiles and generate updated statistics for the combined files✨
combined2dlf(1)convert combined log file to DLF✨
combined_log_format_to_db(1)convert Apache Combined Log Format to Fsdb✨
combinediff(1)create a cumulative unified patch from two incremental patches✨
combineKmers(1)basic algorithm to combine kmer counts across samples This program belongs to seer(1) (Sequence Element (kmer) Enrichment Analysis).✨
combineMUMs(1)package for sequence alignment of multiple genomes✨
combinePatchFaces(1)part of OpenFOAM (The Open Source CFD Toolbox).✨
combinesummaries(1)Scalar Summary Combination Tool✨
combostatus(1)Xymon combination test tool✨
combust(1)✨
comdraw(1)drawtool with distributed command interpreter✨
comedi_board_info(1)reports useful information about COMEDI devices✨
comet-ms(1)The comet-ms package ships the comet-ms binary that does MS/MS database searches.✨
CometAdapter(1)library for LC/MS data management and analysis - tools✨
comgeom-g(1)convert GIFT COMGEOM model into MGED database✨
comgt(1)Option GlobeTrotter GPRS/EDGE/3G/HSDPA and Vodafone 3G/GPRS datacard control tool✨
comicthumb(1)Thumbnailer for cbz, cbr and cbt archives.✨
comigrate(1)managing package migrations from Debian unstable to testing✨
comitup-cli(1)command-line interface for comitup network management✨
comlaw(1sr)surfraw(1) search tools✨
comm(1)compare two sorted files line by line✨
comm(1p)select or reject lines common to two files✨
comm(1posix)select or reject lines common to two files✨
comm(1ppt)select or reject lines common to two files✨
comma(1)Runs programs without installing them✨
command(1)run a program✨
command(1p)execute a simple command✨
command(1posix)execute a simple command✨
commander(1)COMMANDER✨
commandline(1)set or get the current command line buffer✨
commandlinefu(1sr)surfraw(1) search tools✨
commit-partial(1)commit patches to Darcs, Git, Mercurial, Bazaar, Monotone, Subversion, or CVS repositories✨
commit-patch(1)commit patches to Darcs, Git, Mercurial, Bazaar, Monotone, Subversion, or CVS repositories✨
commit_agent(1)Generic CTN manual page✨
commix(1)Automated All-in-One OS Command Injection Exploitation Tool✨
common2dlf(1)convert Common Log Format web server log files to www DLF✨
commoncpp-config(1)script to get information about common c++ library✨
commonize(1)JavaScript transpiler to Node-compatible CommonJS✨
commonmark(1)parse Markdown✨
comodoro(1)CLI to manage personal time✨
comodoro-completion(1)Print completion script for a shell to stdout✨
comodoro-manual(1)Generate manual pages to a directory✨
comodoro-server(1)Manage servers✨
comodoro-timer(1)Manage timers✨
comp(1)compose an nmh message✨
comp(1mh)compose an nmh message✨
comp_err(1)compile MySQL error message file✨
compactor(1)capture DNS traffic and write query/response pair information to file✨
compactsga(1)reads a ChIP-seq data file and merges equal tag positions into a single line✨
compalign(1)compare two multiple alignments✨
compare(1)mathematically and visually annotate the difference between an image and its reconstruction.✨
compare-im6.q16(1)mathematically and visually annotate the difference between an image and its reconstruction.✨
compare-im6.q16hdri(1)mathematically and visually annotate the difference between an image and its reconstruction.✨
compare-im7.q16(1)mathematically and visually annotate the difference between an image and its reconstruction.✨
compare-im7.q16hdri(1)mathematically and visually annotate the difference between an image and its reconstruction.✨
compare_genomes(1)find methylation in nanopore reads✨
compare_hkl(1)compare reflection data✨
compare_octrees(1)Compare two octrees for accuracy / compression✨
compare_scheds(1)compare schedule files generated by schedule✨
compareECL(1)Comparator for Eclipse files✨
comparenodedefs(1)manual page for comparenodedefs 1.39.5✨
comparepdf(1)compare two PDF files textually or visually✨
comparePolishes(1)utilities to work with sim4db-generated alignment files convertPolishes - convert between sim4db and GFF3 formats filterPolishes - filter alignments based on sequence identity, coverage and length…✨
compartment(1)secure program/service wrapper✨
compat_digest.plug(1rrp)a plugin for rpmrebuild, for digest compatibility with rpm 4.4x✨
compel(1)✨
compface(1)compress and expand 48x48x1 face image files✨
compgen(1)bash built-in commands, see bash(1)✨
compile_encoding(1)compile XML encmap into a binary encoded file for XML::Parser✨
compile_encoding(1p)compile XML encmap into a binary encoded file for XML::Parser✨
compile_et(1)error table compiler✨
compiler(1)TTCN-3 and ASN.1 to C++ translator✨
compileserver-3.2.2(1)Helper tool for Free Pascal Compiler (FPC)✨
compileSpliceCands(1)Find introns parsing a set of exon candidates in GFF format✨
compiz(1)OpenGL window and compositing manager✨
compiz-boxmenu(1)control Compiz Boxmenu✨
compiz-boxmenu-daemon(1)the daemon that holds Compiz Boxmenu's menus✨
compiz-boxmenu-dlist(1)tell compiz-boxmenu-daemon to display just a document list✨
compiz-boxmenu-dplist(1)tell compiz-boxmenu-daemon to display just a desktop list✨
compiz-boxmenu-editor(1)edit compiz-boxmenu-daemon's menus.✨
compiz-boxmenu-vplist(1)tell compiz-boxmenu-daemon to display just a viewport list✨
compiz-boxmenu-wlist(1)tell compiz-boxmenu-daemon to display just a window list✨
complete(1)edit command-specific tab-completions✨
complex(1e)Find the linguistic complexity in nucleotide sequences✨
complexity(1)Measure complexity of C source✨