COLLAPSE_PARTIALS(1)

💅 COLLAPSE_PARTIALS 💅

okay bestie, so you know how we're out here annotating genomes with long read transcriptomics data? yeah. this is the little toolkit that does it. the manual page is called collapse_partials, and it lives in section 1 (User Commands). let's get into it 🧚✨

🌸 NAME 🌸

collapse_partials — a whole collection of tools to annotate genomes using long read transcriptomics data 🦋

✨ DESCRIPTION ✨

🎀 Usage of collapse_partials:

here's the lineup, no skips, all of it 👑

• -M — bestie this one is discarding monoexonic transcripts. gone. bye. not invited to the function 💀
• -U — discards transcripts that are not oriented. if it doesn't know which way it's facing, it's not coming in. sorry babe 🙈
• -V — prints out the version. short and sweet, main character energy 💅
• -d int — the internal exon boundary tolerance. default is 5. lowkey precise, highkey slay ⭐
• -e int — the three prime exons boundary tolerance. default is 30 🌸
• -f int — the five prime exons boundary tolerance. default is 5000. yes that's a big number, she's generous like that 💖
• -h — prints out the help message. your bestie when you're lost 🫶
• -prof string — writes out CPU profiling information. go off, data queen 🔥
• -t int — the number of cores to use. default is 4. four cores, four little workers, iconic 👑

👑 AUTHOR 👑

this manpage was written by Nilesh Patra for the Debian distribution, and can be used for any other usage of the program 🎀

k bye bestie, this was collapse_partials version 0.1.0+ds, dated September 2020. periodt. 💖✨