section 1p · User commands 💻

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E (continued)

ecaccess-association-list(1p)List your ECtrans Associations✨
ecaccess-association-protocol(1p)List the supported ECtrans Protocols✨
ecaccess-association-put(1p)Update/Create an Association✨
ecaccess-certificate-create(1p)Create Certificate for the ECtools✨
ecaccess-certificate-list(1p)List Available Operations✨
ecaccess-cosinfo(1p)Display ConsInfo from ECMWF✨
ecaccess-ectrans-delete(1p)Delete ECtrans✨
ecaccess-ectrans-list(1p)List all ECtrans transfers✨
ecaccess-ectrans-request(1p)Request a new ECtrans transfer✨
ecaccess-ectrans-restart(1p)Restart an existing ECtrans transfer✨
ecaccess-event-clear(1p)Clear an ECaccess Event✨
ecaccess-event-create(1p)Create an ECaccess Event✨
ecaccess-event-delete(1p)Delete an ECaccess Event✨
ecaccess-event-grant(1p)Grant usage of an ECaccess Event✨
ecaccess-event-list(1p)List available events✨
ecaccess-event-send(1p)Trigger an ECaccess Event✨
ecaccess-file-chmod(1p)Change ECaccess File Mode Bits✨
ecaccess-file-copy(1p)Copy an ECaccess File✨
ecaccess-file-delete(1p)Remove an ECaccess File✨
ecaccess-file-dir(1p)List ECaccess Directory Contents✨
ecaccess-file-get(1p)Download an ECaccess File✨
ecaccess-file-mdelete(1p)Delete Multiple ECaccess Files at once✨
ecaccess-file-mget(1p)Download Multiple ECaccess Files at once✨
ecaccess-file-mkdir(1p)Make a Directory on the ECaccess File System✨
ecaccess-file-modtime(1p)Show the Last Modification Time of an ECaccess File✨
ecaccess-file-move(1p)Move or Rename ECaccess Files✨
ecaccess-file-mput(1p)Upload Multiple Local Files on the ECaccess File System at once✨
ecaccess-file-put(1p)Upload a File on the ECaccess File System✨
ecaccess-file-rmdir(1p)Remove a Directory on the ECaccess File System✨
ecaccess-file-size(1p)Show the Size of an ECaccess File✨
ecaccess-gateway-connected(1p)Display the ECaccess Gateway Connection Status✨
ecaccess-gateway-list(1p)List the ECaccess Gateways✨
ecaccess-gateway-name(1p)Display the name of the default ECaccess Gateway✨
ecaccess-job-delete(1p)Delete an ECaccess Job✨
ecaccess-job-get(1p)Download a Job Output/Input/Error File✨
ecaccess-job-list(1p)List all ECaccess Jobs✨
ecaccess-job-restart(1p)Restart an ECaccess Job✨
ecaccess-job-submit(1p)Submit a new ECaccess Job✨
ecaccess-queue-list(1p)List available queues✨
echo(1p)write arguments to standard output✨
ed(1p)edit text✨
efa(1p)Command line client for EFA-based public transit routing services✨
elixir-column(1p)reformat 'elixir resolve' output✨
elixir-compose(1p)reformat 'elixir compose' output✨
elixir-resolve(1p)Arabic morphological analyzer derived from ElixirFM✨
Eliza(1p)eliza module✨
email2page(1p)converts RFC822 email text into text suitable for paging✨
embpexec(1p)Run an Embperl file offline✨
embpmsgid(1p)Extract message ids from Embperl files✨
encryptTotpSecrets(1p)A tool to encrypt existing TOTP secrets✨
env(1p)set the environment for command invocation✨
envassert(1p)Ensure that the environment variables match what you need, or abort.✨
envdot(1p)Read .env file and turn its content into environment variables for different shells.✨
envpath(1p)Advanced operations on path variables✨
eval(1p)construct command by concatenating arguments✨
ex(1p)text editor✨
exe_update(1p)Modify windows executable files✨
exec(1p)execute commands and open, close, or copy file descriptors✨
exiftool(1p)Read and write meta information in files✨
exit(1p)cause the shell to exit✨
expand(1p)convert tabs to spaces✨
expchk(1p)Check a keyrec file for expired zones✨
export(1p)set the export attribute for variables✨
expr(1p)evaluate arguments as an expression✨
extract_proteome_from_gff(1p)Take in GFF files and output the proteome✨
extract_vba(1p)A utility to extract a VBA project from an Excel 2007+ xlsm file.✨
extractallimages(1p)Save copies of all PDF images to a directory✨
extractjpgs(1p)Save copies of all PDF JPG images to a directory✨
extrepo(1p)manage external Debian repositories✨

F

false(1p)return false value✨
faqpods(1p)print out pod paths for the standard perl faqs✨
fatpack(1p)Command line frontend for App::FatPacker✨
fc(1p)process the command history list✨
feature_draw(1p)Render a Bio::Graphics Feature File✨
feersum(1p)feersum app loader✨
fg(1p)run jobs in the foreground✨
file(1p)determine file type✨
file-rename(1p)renames multiple files✨
fillpdffields(1p)Replace PDF form fields with specified values✨
filter_mysqlbinlog(1p)Trimming ROLLBACK statements and equivalent BINLOG events added by mysqlbinlog. This script is now obsolete.✨
filter_tradis_tags(1p)filter tags at start of fastq sequences✨
find(1p)find files✨
findimagedupes(1p)Finds visually similar or duplicate images✨
findorule(1p)command line wrapper to File::Find::Object::Rule✨
findrule(1p)command line wrapper to File::Find::Rule✨
fingerw(1p)WWW::Finger command-line tool✨
fix_latin(1p)filters a data stream that is predominantly utf8 and 'fixes' any latin (ie: non-ASCII 8 bit) characters✨
fixkrf(1p)Fixes DNSSEC-Tools keyrec files whose encryption key files have been moved✨
flickr_dump_stored_config(1p)script to display contents of a Flickr::API storable configuration file.✨
flickr_make_stored_config(1p)script to assist with testing and using the Flickr::API✨
flickr_make_test_values(1p)script to assist with testing the Flickr::API✨
flickr_upload(1p)Upload photos to "flickr.com"✨
fold(1p)filter for folding lines✨
fort77(1p)FORTRAN compiler (FORTRAN)✨
fpdns(1p)DNS server fingeprinting tool✨
frend(1p)Render a Bio::Graphics Feature File on the web✨
frozen-bubble(1p)arcade/reflex game✨
frozen-bubble-editor(1p)a level editor for Frozen Bubble✨
ftp-upload(1p)batch transfer local files to an FTP server✨
fuser(1p)list process IDs of all processes that have one or more files open✨
fusioninventory-agent(1p)FusionInventory agent For Linux/UNIX, Windows and MacOSX✨
fusioninventory-esx(1p)vCenter/ESX/ESXi remote inventory from command line✨
fusioninventory-injector(1p)A tool to push inventory in an OCS Inventory or compatible server.✨
fusioninventory-inventory(1p)Standalone inventory✨
fusioninventory-netdiscovery(1p)Standalone network discovery✨
fusioninventory-netinventory(1p)Standalone network inventory✨
fusioninventory-remoteinventory(1p)A tool to pull inventory from an agent✨
fusioninventory-wakeonlan(1p)Standalone wake-on-lan✨

G

gbrowse_aws_balancer(1p)Load balance GBrowse using Amazon Web Service instances✨
gbrowse_clean(1p)Clean up sessions and other temporary gbrowse2 files✨
gbrowse_grow_cloud_vol(1p)Grow the GBrowse volume by the requested amount✨
gbrowse_sync_aws_slave(1p)Synchronize local file system to GBrowse slave volume.✨
gcap(1p)Youtube closed caption downloader✨
gcov2perl(1p)convert gcov files to Devel::Cover databases✨
gearmand(1p)Gearman client/worker connector.✨
gearmand-perl(1p)Gearman client/worker connector.✨
gencat(1p)generate a formatted message catalog✨
genkrf(1p)Generate a keyrec file from Key Signing Key (KSK) and/or Zone Signing Key (ZSK) files✨
genome-music(1p)Mutational Significance in Cancer (Cancer Mutation Analysis)✨
GET(1p)Simple command line user agent✨
get(1p)get a version of an SCCS file (DEVELOPMENT)✨
get_root_domain(1p)Retrieve suffix info from a domain using Domain::PublicSuffix✨
getconf(1p)get configuration values✨
getdnskeys(1p)Manage lists of DNSKEYs from DNS zones✨
getds(1p)Create a DS record from DNSKEYing information✨
getopts(1p)parse utility options✨
getpdffontobject(1p)Print the PDF form field names✨
getpdfpage(1p)Print the PDF page layout commands✨
getpdfpageobject(1p)Print the PDF page metadata✨
getpdftext(1p)Extracts and print the text from one or more PDF pages✨
git-annex-reviewunused(1p)interactively process 'git annex unused' output✨
git-autofixup(1p)create fixup commits for topic branches✨
git-clean-forge-fork(1p)create tidy forks for pull requests✨
git-clean-forge-repo(1p)create repos on git forges with optional features disabled✨
git-nuke-forge-fork(1p)delete forks created by git-clean-forge-fork(1)✨
gitlab-api-v4(1p)Command line interface to the GitLab API v4.✨
glgrib-tk(1p)Perl/Tk interface to glGrib✨
gmail-imap-label(1p)IMAP proxy for Google's Gmail that retrieves message labels✨
gmod_add_organism.pl(1p)Adds an entry to the organism table✨
gmod_bulk_load_gff3.pl(1p)Bulk loads gff3 files into a chado database.✨
gmod_bulk_load_pubmed.pl(1p)stores pubmed entries in the database✨
gmod_chado_properties.pl(1p)reads or modifies the chadoprop table✨
gmod_extract_dbxref_from_gff.pl(1p)Extracts Dbxrefs from GFF3 lines that have Target attributes✨
gmod_fasta2gff3.pl(1p)Convert FASTA to simple GFF3✨
gmod_gff3_preprocessor.pl(1p)Prepares a GFF3 file for bulk loading into a chado database.✨
gmod_load_cvterms.pl(1p)compares which terms are new in the file compared to the database and inserts them✨
gmod_make_cvtermpath.pl(1p)calculates the transitive closure on the ontology terms in the cvterm table✨
gmod_make_gff_from_dbxref.pl(1p)a tool for creating a gff3 file given a list of dbxrefs and fasta files.✨
gmod_materialized_view_tool.pl(1p)a tool for creating and mangaing materialized views for Chado.✨
gmod_sort_gff3.pl(1p)Sorts a GFF3 file to put lines with Parent tags after their parent.✨
gmt-music(1p)Mutational Significance in Cancer (Cancer Mutation Analysis)✨
go-apply-xslt(1p)apply GO XSL on OBO-XML✨
go-dag-summary(1p)summarises an ontology✨
go-export-graph(1p)exports a graph✨
go-export-prolog(1p)exports to prolog✨
go-filter-subset(1p)extracts a subgraph from an ontology file✨
go-show-assocs-by-node(1p)find association for a GO term✨
go-show-paths-to-root(1p)shows all possible paths from a term to the top✨
go2chadoxml(1p)conversion tool and its wrappers✨
go2error_report(1p)converts go/obo to error_report✨
go2fmt(1p)conversion tool and its wrappers✨
go2godb_prestore(1p)conversion tool and its wrappers✨
go2obo(1p)conversion tool and its wrappers✨
go2obo_html(1p)conversion tool and its wrappers✨
go2obo_text(1p)conversion tool and its wrappers✨
go2obo_xml(1p)conversion tool and its wrappers✨
go2owl(1p)conversion tool and its wrappers✨
go2pathlist(1p)conversion tool and its wrappers✨
go2prolog(1p)conversion tool and its wrappers✨
go2rdf(1p)conversion tool and its wrappers✨
go2rdfxml(1p)conversion tool and its wrappers✨
go2summary(1p)conversion tool and its wrappers✨
go2sxpr(1p)conversion tool and its wrappers✨
go2tbl(1p)conversion tool and its wrappers✨
go2text_html(1p)conversion tool and its wrappers✨
go2xml(1p)conversion tool and its wrappers✨
googlism(1p)Search Googlism.com✨
gpgmailtunl(1p)Encrypts an email message into the body of another email.✨
gram-ga.pl(1p)Command-line interface to An Gramadóir✨
grandvizier(1p)DNSSEC-Tools dtrealms GUI✨
graph-easy(1p)render/convert graphs in/from various formats✨
grep(1p)search a file for a pattern✨
grepmail(1p)search mailboxes for mail matching a regular expression✨
groo-ga.pl(1p)Check the grammar of Irish language OpenOffice.org documents✨
gscan2pdf(1p)A GUI to produce PDFs or DjVus from scanned documents✨
gscriptor(1p)Perl script to send commands to a smart card using a Gtk GUI✨
gtf2gff3(1p)Converts GTF formatted files to valid GFF3 files✨

H

hash(1p)remember or report utility locations✨
HEAD(1p)Simple command line user agent✨
head(1p)copy the first part of files✨
hostfiles(1p)A simple script to manage multiple sets of hostfiles on *NIX systems✨
html2pdf(1p)Convert HTML to PDF✨
html2wiki(1p)convert HTML into wiki markup✨
html_formfu_deploy.pl(1p)deploy local copy of HTML::FormFu template files✨
html_formfu_dumpconf.pl(1p)dump configuration files✨
htmlclean(1p)a small script to clean up existing HTML✨
htmlcopy(1p)Copy a HTML file without breaking links.✨
htmltree(1p)Parse the given HTML file(s) and dump the parse tree✨
httprecorder(1p)quick script for recording HTTP traffic✨
hypertoc(1p)generate a table of contents for HTML documents✨