GO-SHOW...BY-NODE(1p)

🦋 GO-SHOW...BY-NODE(1p) — like, the whole vibe

okay so bestie, quick context: this page lives under User Contributed Perl Documentation, and it's all about go-show-assocs-by-node.pl — a lil script that finds the association for a GO term. iconic behavior honestly. 💅

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✨ SYNOPSIS ✨

go-show-assocs-by-node.pl -id GO:0008021 gene_ontology.obo gene_associations.fb

that's it. that's the whole summoning ritual. run it, hand it a GO id plus your .obo and your association file, and it goes off. 🔥

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💖 DESCRIPTION 💖

(girl the DESCRIPTION section is literally just vibes and blank space in the original — nothing written here. we move on, no gatekeeping. 🫶)

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🎀 ARGUMENTS 🎀

• -c — counts</p> the gene products instead of listing them out one by one. so instead of a whole scroll of names, you just get the number. cute and efficient. ✨
• -e ERRFILE — this is where the parse errors get written, in XML. if you don't say anything, it defaults to STDERR. and listen — there should be no parse errors in well formed files, so if you're seeing stuff here, something's up. 😭
• -p FORMAT — tells it which parser to use. leave it out and it'll make a guess based on the file suffix, which, honestly, slay. see below for the formats. 👑

📚 DOCUMENTATION 📚

the docs live here, bestie:

<http://www.godatabase.org/dev>

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ngl, quick vibe check: if you're passing -e and getting actual output, that means your file wasn't well formed. no cap. 💀

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and that's the page!! tysm for reading, you understood the assignment fr fr 🦋🌸

this was brought to you by perl v5.36.0, dated 2023-12-18 — GO-SHOW...BY-NODE(1p), signing off 💖✨