section 1 · User commands 💻

63866 pages · page 78 of 320

F (continued)

faad(1)Process an Advanced Audio Codec stream✨
fab(1)manual page for Fabric 2.6.0✨
fab-cewl(1)extract metadata from files✨
fabio-convert(1)Portable image converter based on FabIO library.✨
fabio_viewer(1)Portable diffraction images viewer/converter * Written in Python, it combines the functionalities of the I/O library fabIO with a user friendly Qt GUI. * Image converter is also a light viewer based…✨
fac(1)F*EX administration tool✨
faceAgglomerate(1)part of OpenFOAM (The Open Source CFD Toolbox).✨
facedetect(1)simple face detector for batch processing✨
facter(1)collect and display facts about the current system✨
facterdb(1)Get a JSON fact set from the facterdb facts database✨
factor(1)factor numbers✨
factor.pl(1)Print prime factors✨
fadecut(1)✨
fades(1)A system that automatically handles the virtualenvs in the cases normally found when writing scripts and simple programs, and even helps to administer big projects.✨
fadvise(1)utility to use the *posix_fadvise*(2) system call✨
faformat.pl(1)Reformat a sequence into fasta format✨
fahash(1)sequence hash builder for reverse e-PCR✨
fai-class(1)define classes using files and scripts.✨
fai-debconf(1)set debconf values using classes✨
fai-do-scripts(1)call configuration scripts✨
fai-link(1)create symlink idempotent✨
fai-mirror(1)create and manage a partial mirror for FAI✨
fai-mk-configspace(1)set up the FAI config space✨
fai-monitor-gui(1)fai monitor daemon, graphical interface✨
fai-sed(1)call sed on a file but check for changes before writing✨
fai2ldif(1)read fai classes and create an ldif file to be imported into an ldap server✨
faidx(1)Fetch sequences from FASTA✨
fail2ban(1)a set of server and client programs to limit brute force authentication attempts.✨
fail2ban-client(1)configure and control the server✨
fail2ban-python(1)a helper for Fail2Ban to assure that the same Python is used✨
fail2ban-regex(1)test Fail2ban "failregex" option✨
fail2ban-server(1)start the server✨
fail2ban-testcases(1)run Fail2Ban unit-tests✨
faithpd(1)high-performance phylogenetic diversity calculations✨
fakechanges(1)reverse engineer a Debian .changes file.✨
fakechroot(1)gives a fake chroot environment✨
fakeCMY(1)Create a fake CMY data file from a CMYK profile.✨
faked(1)daemon that remembers fake ownership/permissions of files manipulated by fakeroot processes.✨
faked-sysv(1)daemon that remembers fake ownership/permissions of files manipulated by fakeroot processes.✨
faked-tcp(1)daemon that remembers fake ownership/permissions of files manipulated by fakeroot processes.✨
fakemachine(1)fake a machine Creates a virtual machine based on the currently running system.✨
fakenect(1)Run a program by faking the Kinect✨
fakenect-record(1)program to save dumps from kinect to file✨
faker(1)command to generate fake data✨
fakeread(1)Fake test chart reader - lookup values in ICC/MPP profile.✨
fakeroot(1)run a command in an environment faking root privileges for file manipulation✨
fakeroot-ng(1)run a command while making it believe it is running as root✨
fakeroot-pseudo(1)run a command in an environment faking root privileges for file manipulation✨
fakeroot-sysv(1)run a command in an environment faking root privileges for file manipulation✨
fakeroot-tcp(1)run a command in an environment faking root privileges for file manipulation✨
faketime(1)manipulate the system time for a given command✨
falcodump(1)Dump log data to a file using a Falco source plugin.✨
falcon(1)The Falcon Programming Language command line interpreter✨
falcon-conf(1)Falcon makefile settings helper✨
falconeer.fal(1)Falcon skeleton module startup configurator script✨
faldisass(1)The Falcon disassembler✨
falkon(1)lightweight web browser✨
fallc.fal(1)Falcon Language table compiler✨
fallocate(1)preallocate or deallocate space to a file✨
falpack(1)The falcon application packaging tool✨
falrun(1)The Falcon command line execution tool✨
false(1)do nothing, unsuccessfully✨
FalseDiscoveryRate(1)library for LC/MS data management and analysis - tools✨
falselogin(1)a false login shell✨
faltest(1)Falcon unit test interface.✨
famap(1)prepare Fasta sequence database for re-PCR searches✨
famdef(1)repeatmaker helper to define families✨
fangfrisch(1)update and verify unofficial Clam Anti-Virus signatures✨
fantasdic(1)Versatile dictionary application✨
fapg(1)Fast Audio Playlist Generator✨
faqpods(1)print out pod paths for the standard perl faqs✨
far2l(1)Two-panel file manager, with built-in terminal and other usefulness´es.✨
far2ledit(1)Two-panel file manager, with built-in terminal and other usefulness´es.✨
farcompilestrings(1)store compiled FSTs in a finite-state archive✨
farconvert(1)manual page for farconvert 1.8.4✨
farcreate(1)create a finite-state archive from input FSTs✨
farencode(1)manual page for farencode 1.8.4✨
farequal(1)test if two finite-state archives have equal contents✨
farextract(1)extract FSTs from a finite-state archive✨
farinfo(1)query a finite-state archive✨
farisomorphic(1)test if the FSTs in two finite-state archives are isomorphic✨
farm-run.pl(1)helps running maq jobs in batch mode✨
farprintstrings(1)print FSTs in a finite-state archive as strings✨
fasd(1)quick access to files and directories✨
fasm(1)fast assembler for the x86 and x86-64 architectures✨
fast-discovery-server(1)centralized broker for DDS service discovery✨
fast4-g(1)convert a FASTGEN4 file to a BRL-CAD geometry database✨
Fast5_to_seq_summary(1)generate a sequencing summary like file from a directory containing Fast5 files✨
fasta-nr(1)Keep the first of identical sequences✨
fasta2DAM(1)manage nucleotide sequencing read data for the Dazzler assembler✨
fasta2DB(1)manage nucleotide sequencing read data for the Dazzler assembler✨
fasta2esd(1)suite for investigating DNA and RNA sequence similarities✨
fasta2gsi(1)detection of transfer RNA genes in genomic sequence✨
fasta36(1)scan a protein or DNA sequence library for similar sequences fastx36 - compare a DNA sequence to a protein sequence database, comparing the translated DNA sequence in forward and reverse frames…✨
fasta_to_raw(1)Convert fasta to raw input for pscan_chip✨
fastaannotatecdna(1)suite for investigating DNA and RNA sequence similarities✨
fastachecksum(1)suite for investigating DNA and RNA sequence similarities✨
fastaclean(1)suite for investigating DNA and RNA sequence similarities✨
fastaclip(1)suite for investigating DNA and RNA sequence similarities✨
fastacomposition(1)suite for investigating DNA and RNA sequence similarities✨
fastadiff(1)suite for investigating DNA and RNA sequence similarities✨
fastaexplod(1)split multi sequence FastA file into one file per sequence✨
fastaexplode(1)suite for investigating DNA and RNA sequence similarities✨
fastafetch(1)suite for investigating DNA and RNA sequence similarities✨
fastahack(1)fastahack - indexing and extracting sequences and subsequences from FASTA files✨
fastahardmask(1)suite for investigating DNA and RNA sequence similarities✨
fastaindex(1)suite for investigating DNA and RNA sequence similarities✨
fastalength(1)suite for investigating DNA and RNA sequence similarities✨
fastANI(1)Fast alignment-free computation of whole-genome Average Nucleotide Identity✨
fastanrdb(1)suite for investigating DNA and RNA sequence similarities✨
fastaoverlap(1)suite for investigating DNA and RNA sequence similarities✨
fastapi(1)FastAPI CLI – The fastapi command line app. 😎✨
fastapi-cloud(1)Manage FastAPI Cloud deployments.✨
fastapi-cloud-apps(1)Manage your FastAPI Cloud apps.✨
fastapi-cloud-apps-create(1)Create a FastAPI Cloud app.✨
fastapi-cloud-apps-get(1)Get a FastAPI Cloud app by ID.✨
fastapi-cloud-apps-link(1)Link a local directory to an existing FastAPI Cloud app.✨
fastapi-cloud-apps-list(1)List FastAPI Cloud apps.✨
fastapi-cloud-apps-logs(1)Stream or fetch logs from your deployed app.✨
fastapi-cloud-apps-unlink(1)Unlink by deleting the .fastapicloud/cloud.json file.✨
fastapi-cloud-apps-update(1)Update FastAPI Cloud app metadata.✨
fastapi-cloud-auth(1)Authenticate with FastAPI Cloud.✨
fastapi-cloud-auth-login(1)Login to FastAPI Cloud.✨
fastapi-cloud-auth-wait(1)Wait for a device authorization flow to complete.✨
fastapi-cloud-ci(1)Manage CI integration helpers.✨
fastapi-cloud-ci-print-workflow(1)Prints the GitHub Actions workflow YAML without writing files or secrets.✨
fastapi-cloud-ci-setup(1)Configures a GitHub Actions workflow for deploying the app on push to the specified branch.✨
fastapi-cloud-deploy(1)Deploy a FastAPI app to FastAPI Cloud. 🚀✨
fastapi-cloud-deployments(1)Manage the deployments of your app.✨
fastapi-cloud-deployments-build-logs(1)Stream or fetch build logs for a FastAPI Cloud deployment.✨
fastapi-cloud-deployments-get(1)Get a FastAPI Cloud deployment by ID.✨
fastapi-cloud-deployments-list(1)List FastAPI Cloud deployments for an app.✨
fastapi-cloud-env(1)Manage the environment variables of your app.✨
fastapi-cloud-env-delete(1)Delete an environment variable from the app.✨
fastapi-cloud-env-get(1)Get an environment variable for the app.✨
fastapi-cloud-env-list(1)List the environment variables for the app.✨
fastapi-cloud-env-set(1)Set an environment variable for the app.✨
fastapi-cloud-integrations(1)Manage third-party integrations.✨
fastapi-cloud-integrations-providers(1)Manage integration providers for a team.✨
fastapi-cloud-integrations-providers-list(1)List integration providers and their connection status for a team.✨
fastapi-cloud-integrations-resources(1)Manage resources connected to an app.✨
fastapi-cloud-integrations-resources-connect(1)Open FastAPI Cloud to connect a provider resource to an app.✨
fastapi-cloud-integrations-resources-disconnect(1)List resources connected to an app.✨
fastapi-cloud-integrations-resources-get(1)Get a resource connected to an app.✨
fastapi-cloud-integrations-resources-list(1)List resources connected to an app.✨
fastapi-cloud-link(1)Link a local directory to an existing FastAPI Cloud app.✨
fastapi-cloud-login(1)Login to FastAPI Cloud.✨
fastapi-cloud-logout(1)Logout from FastAPI Cloud.✨
fastapi-cloud-logs(1)Stream or fetch logs from your deployed app.✨
fastapi-cloud-setup-ci(1)Configures a GitHub Actions workflow for deploying the app on push to the specified branch.✨
fastapi-cloud-teams(1)Manage your FastAPI Cloud teams.✨
fastapi-cloud-teams-get(1)Get a FastAPI Cloud team by ID.✨
fastapi-cloud-teams-list(1)List FastAPI Cloud teams.✨
fastapi-cloud-tokens(1)Manage deploy tokens for your app.✨
fastapi-cloud-tokens-create(1)Create a deploy token for an app.✨
fastapi-cloud-tokens-delete(1)Delete a deploy token for an app.✨
fastapi-cloud-tokens-list(1)List deploy tokens for an app.✨
fastapi-cloud-unlink(1)Unlink by deleting the .fastapicloud/cloud.json file.✨
fastapi-cloud-whoami(1)Show the currently logged in user.✨
fastapi-deploy(1)Deploy a FastAPI app to FastAPI Cloud. 🚀✨
fastapi-dev(1)Run a FastAPI app in development mode. 🧪✨
fastapi-login(1)Login to FastAPI Cloud. 🚀✨
fastapi-logout(1)Logout from FastAPI Cloud. 🚀✨
fastapi-new(1)Create a new FastAPI project in one command✨
fastapi-run(1)Run a FastAPI app in production mode. 🚀✨
fastaq(1)FASTA and FASTQ file manipulation tools✨
fastaq-acgtn_only(1)Replace every non acgtnACGTN with an N✨
fastaq-add_indels(1)Deletes or inserts bases at given position(s)✨
fastaq-caf_to_fastq(1)Converts a CAF file to FASTQ format✨
fastaq-capillary_to_pairs(1)Converts file of capillary reads to paired and unpaired files✨
fastaq-chunker(1)Splits sequences into equal sized chunks✨
fastaq-count_sequences(1)Counts the sequences in input file✨
fastaq-deinterleave(1)Splits interleaved paired file into two separate files✨
fastaq-enumerate_names(1)Renames sequences in a file, calling them 1,2,3... etc✨
fastaq-expand_nucleotides(1)Makes every combination of degenerate nucleotides✨
fastaq-fasta_to_fastq(1)Convert FASTA and .qual to FASTQ✨
fastaq-filter(1)Filter sequences to get a subset of them✨
fastaq-get_ids(1)Get the ID of each sequence✨
fastaq-get_seq_flanking_gaps(1)Gets the sequences flanking gaps✨
fastaq-interleave(1)Interleaves two files, output is alternating between fwd/rev reads✨
fastaq-make_random_contigs(1)Make contigs of random sequence✨
fastaq-merge(1)Converts multi sequence file to a single sequence✨
fastaq-replace_bases(1)Replaces all occurrences of one letter with another✨
fastaq-reverse_complement(1)Reverse complement all sequences✨
fastaq-scaffolds_to_contigs(1)Creates a file of contigs from a file of scaffolds✨
fastaq-search_for_seq(1)Find all exact matches to a string (and its reverse complement)✨
fastaq-sequence_trim(1)Trim exact matches to a given string off the start of every sequence✨
fastaq-sort_by_name(1)Sorts sequences in lexographical (name) order✨
fastaq-sort_by_size(1)Sorts sequences in length order✨
fastaq-split_by_base_count(1)Split multi sequence file into separate files✨
fastaq-strip_illumina_suffix(1)Strips /1 or /2 off the end of every read name✨
fastaq-to_boulderio(1)Converts to Boulder-IO format, used by primer3✨
fastaq-to_fake_qual(1)Make fake quality scores file✨
fastaq-to_fasta(1)Converts a variety of input formats to nicely formatted FASTA format✨
fastaq-to_mira_xml(1)Create an xml file from a file of reads, for use with Mira assembler✨
fastaq-to_orfs_gff(1)Writes a GFF file of open reading frames✨
fastaq-to_perfect_reads(1)Make perfect paired reads from reference✨
fastaq-to_random_subset(1)Make a random sample of sequences (and optionally mates as well)✨
fastaq-to_tiling_bam(1)Make a BAM file of reads uniformly spread across the input reference✨
fastaq-to_unique_by_id(1)Remove duplicate sequences, based on their names. Keep longest seqs✨