FASTAQ-GET_SEQ_FLANKING_GAPS(1)

🦋 NAME 🦋

okay so fastaq_get_seq_flanking_gaps — literally the tool that gets the sequences flanking gaps. that's it, that's the whole vibe. it's a section 1 (User Commands) girlie, iykyk 💅

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✨ DESCRIPTION ✨

bestie. here's the whole deal, exactly how you'd see it if you ran it yourself:

usage: fastaq_get_seq_flanking_gaps [options] <infile> <outfile>

Gets the sequences flanking gaps. yes, that's the actual description. she's a short queen and she knows it. 👑

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🎀 positional arguments 🎀

these are the ones you just... hand over. no flags, no nothing. slay.

• infile — Name of input file. this is the file you're feeding her 🍓
• outfile — Name of output file. this is where the goodness goes 💖

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🌸 options 🌸

the flag buffet. every single one, no gatekeeping 🫶

• -h, --help — show this help message and exit. classic. iconic. when in doubt, ask for help 💅
• --left INT — Number of bases to get to left of gap. default is [25] ✨
• --right INT — Number of bases to get to right of gap. default is also [25] ✨

lowkey the defaults are symmetric and that's kind of a serve ngl, both sides get 25 bases unless you say otherwise 🌈

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that's the whole page, no notes 💜

🌸 sign-off time, bestie 🌸 — this manual page is for fastaq_get_seq_flanking_gaps, version 3..., dated January 2026, and it lives in the User Commands section (section 1). take care of her, she's small but she's powerful 🦋💖