📦 srst2

8 pages

C

csv_to_gene_db(1)generate the appropriate headers for srst2✨

G

get_all_vfdb(1)automate generation of all the VFDB gene databases for use with srst2✨
get_genus_vfdb(1)automate generation of a VFDB gene database for a specified genus for use with srst2✨
getmlst(1)Download MLST datasets by speciesfrom pubmlst.org.✨

S

slurm_srst2(1)running srst2 against multiple read sets✨
srst2(1)Short Read Sequence Typer✨

V

VFDB_cdhit_to_csv(1)Parse cdhit results✨
VFDBgenus(1)Extract virulence genes by genus from the VFDB database✨