VFDB_CDHIT_TO_CSV(1)

✨ VFDB_CDHIT_TO_CSV(1) — User Commands 💖

🦋 NAME

okay bestie, the name of this tool is VFDB_cdhit_to_csv, and it's all about parsing CD-HIT results 🧚

🌸 SYNOPSIS

VFDB_cdhit_to_csv [-h] --cluster_file CLUSTER_FILE --infile INFILE
--outfile OUTFILE

💅 DESCRIPTION

so this tool is part of the SRST2 suite 🔥

it outputs a comma-separated table of alleles, their inferred gene name (pulled from annotation), and their 90% cluster from the CD-HIT analysis. literally the whole vibe is giving organized data 📊✨

🎀 OPTIONS

🌈 optional arguments

• -h, --help — shows the help message and exits 🙈
• --cluster_file CLUSTER_FILE — the CD-HIT output file, the one ending in .clstr 💜
• --infile INFILE — the raw sequences file that got fed into CD-HIT, in fasta format 🍓
• --outfile OUTFILE — where the output goes, a csv file 🫶

👑 AUTHOR

this manpage was written by Andreas Tille for the Debian distribution, and it can be used for any other usage of the program. iconic behavior, no cap 💖

bye bestie, VFDB_cdhit_to_csv 0.1.8, last updated June 2016 🦋✨ periodt 💅