📦 libbio-db-hts-perl

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• Bio::DB::HTS(3pm)Read files using HTSlib including BAM/CRAM, Tabix and BCF database files✨
• Bio::DB::HTS::Alignment(3pm)The HTS alignment object✨
• Bio::DB::HTS::AlignWrapper(3pm)Add high-level methods to Bio::DB::HTS::Alignment✨
• Bio::DB::HTS::ConfigData(3pm)Configuration for Bio::DB::HTS✨
• Bio::DB::HTS::Constants(3pm)Constants for use with SAM/BAM✨
• Bio::DB::HTS::Faidx(3pm)Perl extension for accessing bgzip compressed and indexed FASTA using htslib✨
• Bio::DB::HTS::FetchIterator(3pm)✨
• Bio::DB::HTS::Kseq(3pm)Bindings to Kseq✨
• Bio::DB::HTS::Kseq::Iterator(3pm)The Kseq iterator✨
• Bio::DB::HTS::Kseq::Record(3pm)Entry from a Kseq iterator✨
• Bio::DB::HTS::Pileup(3pm)Object passed to pileup() callback✨
• Bio::DB::HTS::PileupWrapper(3pm)Add high-level methods to Bio::DB::HTS::Pileup✨
• Bio::DB::HTS::Query(3pm)Object representing the query portion of a BAM/SAM alignment✨
• Bio::DB::HTS::ReadIterator(3pm)✨
• Bio::DB::HTS::Segment(3pm)✨
• Bio::DB::HTS::Tabix(3pm)Object oriented access to the underlying tbx C methods✨
• Bio::DB::HTS::Tabix::Iterator(3pm)XS module wrapping around a tabix hts_itr_t✨
• Bio::DB::HTS::Target(3pm)Object representing the query portion of a BAM/SAM alignment in NATIVE alignment✨
• Bio::DB::HTS::VCF(3pm)Read VCF/BCF data files✨
• Bio::DB::HTS::VCF::Iterator(3pm)XS module wrapping around a hts_itr_t✨