Bio::D...Target(3pm)

💖 LICENSE 💖

okay bestie, legal first, vibes after ✨

Copyright [2015-2018] EMBL-European Bioinformatics Institute

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.

fr fr, that last bit is not a suggestion — it's the whole deal. no warranty, no promises, that's the Apache 2.0 way 💀

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🎀 NAME 🎀

Bio::DB::HTS::Target — the whole entire glow-up of an object that represents the query portion of a BAM/SAM alignment, but in NATIVE alignment 💅

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🌸 SYNOPSIS 🌸

so here's the tea, and it's a short one because honestly this class is just its sibling with a plot twist 🦋

This is identical to Bio::DB::HTS::Query, except that the dna, qscores and the start and end positions are all given in the orientation in which the read was sequenced, not in the orientation in which it was aligned.

not me double-checking which way round your coordinates go 🙈 if you're used to the aligned view, this is gonna feel like looking in a mirror. that's the point tho 👑

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👑 AUTHOR 👑

Rishi Nag <rishi@ebi.ac.uk> 💜

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and that's the whole page, bestie — no cap, it's a tiny one but it's iconic for what it does 🎀

Bio::D...Target(3pm) from the User Contributed Perl Documentation, shipped with perl v5.40.0, dated 2024-10-31 🌈 go forth and align responsibly, mwah 💖🧚