Bio::D...Record(3pm)

πŸ’– LICENSE πŸ’–

okay bestie, legal first because we're responsible icons ✨

Copyright [2015-2018] EMBL-European Bioinformatics Institute

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.

fr fr read it, it's giving "we are not liable for anything, bestie, proceed at your own risk" πŸ’…

🌸 NAME 🌸

Bio::DB::HTS::Kseq::Record β€” literally just one Entry from a Kseq iterator πŸ¦‹

This is the Bio::D...Record(3pm) page btw, in case you were squinting at your terminal wondering where you were. You're home. πŸŽ€


✨ SYNOPSIS ✨

the whole vibe in one loop, no cap:

  while(my $r = $iter->next_seq()) {
    say $r->name;
    say $r->desc;
    say $r->seq;
    say $r->qual;
  }

like… you pull records off the iterator one at a time and every single one of them is a whole Record object with its own little personality. main character energy, each and every one πŸ‘‘


🫢 METHODS 🫢

  • name β€” The name of a FASTA/Q record. that's the identifier bestie, the ~who am I~ of the record 🌟
  • desc β€” The description from a FASTA/Q record. the little blurb, the caption, the ✨lore✨ that comes after the name πŸ“
  • seq β€” The sequence from a FASTA/Q record. the actual nucleotides/whatever, the moment we've all been waiting for 🧬
  • qual β€” The quality string from a FASTA/Q record. the confidence report card, one character per base, no notes πŸ™ˆ

not me ending the page already 😭

this was Bio::D...Record(3pm) from the perl v5.40.0 docs, dated 2024-10-31 β€” user contributed perl documentation, so you know it's a community slay πŸ’– stay sequenced, bestie, mwah πŸŽ€πŸ’…πŸ¦‹

πŸ“¦ where this page comes from