📦 fsa

F

• fsa(1)Distance-based alignment of DNA, RNA and proteins✨
• fsa-translate(1)Translate input nucleotide sequences into protein sequence✨

G

• gapcleaner(1)Find the most-parsimonious ordering of indels✨

I

• isect_mercator_alignment_gff(1)Extracts subalignments from a Mercator multiple alignment for the features in the GFF file✨

M

• map_coords(1)Map coordinates from one genome to another using a Mercator multiple alignment✨
• map_gff_coords(1)Map coordinates of GFF features from one genome to another using a Mercator multiple alignment✨

P

• percentid(1)Calculate the percentage identity of the passed alignment✨
• prot2codon(1)Find the codon alignment corresponding to the given protein alignment✨

S

• slice_fasta(1)Slice a subsequence from an input FASTA file✨
• slice_fasta_gff(1)Slice subsequences from an input FASTA file✨
• slice_mercator_alignment(1)Extracts the corresponding subalignment from a Mercator multiple alignment✨

T

• translate(1)Translate input nucleotide sequences into protein sequence✨