SLICE_FASTA_GFF(1)

🎀 slice_fasta_gff(1) — the manual page, but make it cute 🎀

okay bestie, pull up a chair because we're about to talk about slice_fasta_gff, section 1 of the manual. yes that's the vibe. it's giving "I slice DNA and I do it flawlessly." 💅

✨ NAME ✨

slice_fasta_gff — slice subsequences from an input FASTA file. literally its whole personality. 🧬

🌸 SYNOPSIS 🌸

slice_fasta [options] <FASTA file> <GFF file>

that's it. that's the whole invocation. two files, some options, and we're off. no cap. ✨

💖 DESCRIPTION 💖

slice_fasta from FSA 1.15.9. that's the version, and yes, we're citing it. periodt.

👑 OPTIONS 👑

• -t, --type <string> — only look at features of a particular type. like, bestie, if you only care about one flavor of feature, you tell it here and it minds its business about everything else. 🎯

Slice subsequences from an input FASTA file. it assumes 1-based, fully-closed coordinates — so like, the endpoints are included, okay? don't come at it with your weird half-open 0-indexed energy. 🙅

If no strand information is available, then the + strand is assumed. simple. chill. If the - strand is requested, then the subsequence is pulled out and then reverse-complemented — the way it flips and complements it? iconic, honestly. 🔥

Assumes a DNA alphabet. no RNA shenanigans here, sorry to the U stans. 💜

🌈 AUTHOR 🌈

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program. king behavior, truly. 🫶

and that's the whole thing, bestie!! 💖 this page is slice_fasta_gff 1.15.9, dated December 2015, and it lives in section 1 of the manual. now go slice some subsequences and slay. 🦋✨🎀