📦 seqan-apps

A

• alf(1)Alignment free sequence comparison✨

G

• gustaf(1)Gustaf - Generic mUlti-SpliT Alignment Finder: Tool for split- read mapping allowing multiple splits.✨

I

• insegt(1)INtersecting SEcond Generation sequencing daTa with annotation✨

M

• mason_frag_sequencing(1)Fragment Sequencing Simulation✨
• mason_genome(1)Random Genome Simulation✨
• mason_materializer(1)VCF Materialization✨
• mason_methylation(1)Methylation Level Simulation✨
• micro_razers(1)Map small RNA reads possibly containing 3' adapter sequence✨

P

• pair_align(1)Pairwise alignment✨

R

• rabema_build_gold_standard(1)RABEMA Gold Standard Builder✨
• rabema_evaluate(1)RABEMA Evaluation✨
• rabema_prepare_sam(1)Prepare SAM For Rabema✨
• razers(1)Fast Read Mapping with Sensitivity Control✨
• razers3(1)Faster, fully sensitive read mapping✨

S

• sak(1)Slicing and dicing of FASTA/FASTQ files..✨
• seqan_tcoffee(1)Multiple sequence alignment✨
• snp_store(1)SnpStore✨
• splazers(1)Split-map read sequences✨
• stellar(1)the SwifT Exact LocaL AligneR✨

T

• tree_recon(1)Tree reconstruction✨

Y

• yara_indexer(1)Yara Indexer✨
• yara_mapper(1)Yara Mapper✨