📦 pftools

17 pages

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  • 2ft(1)2-frame translation of a DNA sequence into protein✨
  • 6ft(1)6-frame translation of a DNA sequence into protein✨

P

  • pfdump(1)dump tool of pftools package✨
  • pfgtop(1)convert a profile in GCG format into PROSITE format✨
  • pfhtop(1)convert a HMMER ASCII-formatted HMM into an equivalent PROSITE profile✨
  • pfmake(1)generate a profile from a multiple sequence alignment✨
  • pfscale(1)fit parameters of an extreme-value distribution to a profile score list✨
  • pfscan(1)scan a protein or DNA sequence with a profile library✨
  • pfsearch(1)search a protein or DNA sequence library for sequence segments matching a profile✨
  • pfsearchV2(1)search a protein or DNA sequence library for sequence segments matching a profile✨
  • pfsearchV3(1)search protein and DNA generalized profiles (version 3)✨
  • pfw(1)print focused window✨
  • psa(5)biological sequence alignment file format✨
  • psa2msa(1)reformat PSA file to Pearson/Fasta multiple sequence alignment file✨
  • ptof(1)convert a protein profile into a frame-search profile✨
  • ptoh(1)converts a PROSITE formatted profile into an approximately equivalent HMM✨

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