📦 libbio-searchio-hmmer-perl

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• Bio::Index::Hmmer(3pm)indexes HMMER reports and supports retreival based on query✨
• Bio::Search::Hit::hmmer3Hit(3pm)DESCRIPTION of Object✨
• Bio::Search::Hit::HMMERHit(3pm)A Hit module for HMMER hits✨
• Bio::Search::Hit::HmmpfamHit(3pm)A parser and hit object for hmmpfam hits✨
• Bio::Search::HSP::HMMERHSP(3pm)A HSP object for HMMER results✨
• Bio::Search::HSP::HmmpfamHSP(3pm)A parser and HSP object for hmmpfam hsps✨
• Bio::Search::Result::hmmer3Result(3pm)DESCRIPTION of Object✨
• Bio::Search::Result::HMMERResult(3pm)A Result object for HMMER results✨
• Bio::Search::Result::HmmpfamResult(3pm)A parser and result object for hmmpfam results✨
• Bio::SearchIO::hmmer(3pm)A parser for HMMER2 and HMMER3 output (hmmscan, hmmsearch, hmmpfam)✨
• Bio::SearchIO::hmmer2(3pm)A parser for HMMER output (hmmpfam, hmmsearch)✨
• Bio::SearchIO::hmmer3(3pm)✨
• Bio::SearchIO::hmmer_pull(3pm)A parser for HMMER output✨
• Bio::Tools::HMMER::Domain(3pm)One particular domain hit from HMMER✨
• Bio::Tools::HMMER::Results(3pm)Object representing HMMER output results✨
• Bio::Tools::HMMER::Set(3pm)Set of identical domains from HMMER matches✨
• Bio::Tools::Hmmpfam(3pm)Parser for Hmmpfam program✨
• bp_hmmer_to_table.pl(1p)turn HMMER output into tabular format✨
• bp_parse_hmmsearch.pl(1p)parse single/multiple HMMSEARCH results file(s) with different output options✨