BP_PARS...MSEARCH(1p)

📦
version 1.7.3 · 2 versions
, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble

💖 BP_PARS...MSEARCH(1p) 💖

okay bestie, welcome to the bp_parse_hmmsearch page — it lives in section 1p of the User Contributed Perl Documentation, and it's literally your little helper for parsing single or multiple HMMSEARCH results file(s) with different output options. yes, plural. yes, options. slay. 💅

✨ SYNOPSIS ✨

bp_parse_hmmsearch [--po] [--ps] -s hmmsearch_file

bp_parse_hmmsearch [--po] [--ps] -m index_file

like. two whole modes. pick your fighter. 🎀

🌸 DESCRIPTION 🌸

🫶 Mandatory Options

so these ones? not optional. mandatory. the main characters of the flag world. you have to pick one of them:

  • -s — the HMMSEARCH file you wanna parse. just one, single-file energy. ✨
  • -m — an INDEX file that holds a list of HMMSEARCH files, for when you're parsing multiple at once. it's giving "I contain multitudes". 🦋

💅 Special Options

the lil extras, the accessories to the outfit:

  • --po — print only the hits that have positive scores. no negativity allowed in this household. 🙈
  • --ps — print the total of positive scores found. it's math o'clock bestie, and it's adding up. 🔥
  • --help — show this documentation. hi hello, the manual you're currently reading. iconic of it. 💖

🌈 FEEDBACK 🌈

💌 Mailing Lists

okay so user feedback is an integral part of the evolution of this and other Bioperl modules — like, they genuinely want to hear from you. send your comments and suggestions preferably to the Bioperl mailing list. your participation is much appreciated, fr fr. 🫶

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

🐛 Reporting Bugs

found a bug? not the vibe, but also very valid. report it to the Bioperl bug tracking system so they can keep track of the bugs and their resolution. bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues
ngl bestie, if you find a bug, tell them. that's the assignment. 🎯

👑 AUTHOR 👑

Mauricio Herrera Cuadra <mauricio at open-bio.org>

the author!! the moment!! the legend!! 🫡

aaaand that's the whole page, bestie. this was perl v5.30.0, dated 2019-10-29, and it came to you courtesy of BP_PARS...MSEARCH(1p) — stay parsed, stay positive-scores-only, mwah. 💜🧚⭐

📦 where this page comes from