📦 last-align

F

• fasta-nr(1)Keep the first of identical sequences✨
• fastq-interleave(1)Read 2 fastq files, and write them interleaved✨

L

• last-dotplot(1)make a dotplot, a.k.a. Oxford Grid, of alignments in LAST tabular format✨
• last-map-probs(1)Add extra column with mapping probabilities✨
• last-merge-batches(1)Read files of lastal output, merge corresponding batches, and write them✨
• last-pair-probs(1)Read alignments of paired DNA reads to a genome, and do estimations✨
• last-postmask(1)Get alignments that have a segment with score >= threshold, with gentle masking of lowercase letters✨
• last-split(1)Estimates "split" or "spliced" alignments.✨
• last-split5(1)Estimates "split" or "spliced" alignments.✨
• last-train(1)Try to find suitable score parameters for aligning the given sequences✨
• lastal(1)genome-scale comparison of biological sequences✨
• lastal5(1)genome-scale comparison of biological sequences✨
• lastdb(1)genome-scale comparison of biological sequences✨

M

• maf-convert(1)Convert MAF-format alignments to tabular format✨
• maf-cut(1)manual page for maf-cut 1654✨
• maf-join(1)Join two or more sets of MAF-format multiple alignments✨
• maf-sort(1)Sort MAF-format alignments by sequence name✨
• maf-swap(1)changes the order of the sequences in MAF-format alignments✨