LAST-MAP-PROBS(1)

📦 version 1654, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 LAST-MAP-PROBS(1) 💖

okay bestie, so this one lives in the User Commands section of the manual, and honestly? it's giving humble little helper script that does one (1) thing and does it flawlessly. no cap. 💅

✨ NAME ✨

last-map-probs — add an extra column with mapping probabilities 🎀

🦋 SYNOPSIS 🦋

last-map-probs [options] lastal-alignments

🌸 DESCRIPTION 🌸

So what this does: it calculates a mismap probability for every single alignment. 🔥

And what is a mismap probability, you ask? bestie it's literally this — it's the probability that the alignment does not reflect the origin of the query sequence. and that's under the assumption that one of the reported alignments does reflect the origin of each query. one of them is telling the truth, and this tool is out here doing a vibe check on all of them. 🕵️♀️

💜 OPTIONS 💜

  • -h, --help — show this help message and exit. iconic. the classic. the moment you're lost, she's there. 🫶
  • -m M, --mismap=M — don't write alignments with mismap probability > M (default: 0.01). like, if the mismap probability is above M, she simply will not be posting it. not today. 🙈
  • -s S, --score=S — don't write alignments with score < S (default: e+t*ln[1000]). low scorers get left on read, sorry not sorry. 💀
💌 little heads up: those defaults are exactly 0.01 and e+t*ln[1000] — don't go rewriting them in your head, bestie, they're load-bearing.

🌈 the cute sign-off 🌈

this page is last-map-probs, version 712, dated December 2015 💖 and that's the whole manual, bestie. go calculate some probabilities, you absolute main character. periodt. 👑✨

📦 where this page comes from