📦 hmmer

21 pages

A

  • alimask(1)calculate and add column mask to a multiple sequence alignment✨

H

  • hmmalign(1)align sequences to a profile✨
  • hmmbuild(1)construct profiles from multiple sequence alignments✨
  • hmmc2(1)example client for the HMMER daemon✨
  • hmmconvert(1)convert profile file to various formats✨
  • hmmemit(1)sample sequences from a profile✨
  • hmmer(1)profile HMMs for biological sequence analysis✨
  • hmmfetch(1)retrieve profiles from a file✨
  • hmmlogo(1)produce a conservation logo graphic from a profile✨
  • hmmpgmd(1)daemon for database search web services✨
  • hmmpgmd_shard(1)sharded daemon for database search web services✨
  • hmmpress(1)prepare a profile database for hmmscan✨
  • hmmscan(1)search sequence(s) against a profile database✨
  • hmmsearch(1)search profile(s) against a sequence database✨
  • hmmsim(1)collect profile score distributions on random sequences✨
  • hmmstat(1)summary statistics for a profile file✨

J

  • jackhmmer(1)iteratively search sequence(s) against a sequence database✨

M

N

  • nhmmer(1)search DNA queries against a DNA sequence database✨
  • nhmmscan(1)search DNA sequence(s) against a DNA profile database✨

P

  • phmmer(1)search protein sequence(s) against a protein sequence database✨