hmmc2(1)

📦 version 3.3.2, in debian bookworm, fedora 43, fedora 44, ubuntu jammy

✨ hmmc2 — the moment has arrived ✨

okay so bestie, welcome to hmmc2(1) 💅 this is the client, the little text-side bestie for the HMMER daemon, and it lives in the HMMER Manual. let's get into it 🫶

🌸 NAME 🌸

hmmc2 — it's the example client for the HMMER daemon. literally what it says on the tin, no cap ✨

🎀 SYNOPSIS 🎀

hmmc2 [options]

that's it. that's the whole vibe. just you and your options 💖

🦋 DESCRIPTION 🦋

so hmmc2 is a text client for the hmmpgmd or hmmpgmd_shard daemons. the way that works is: the second you run it, it opens up a connection to a daemon at whatever IP address and port you told it about, and then it just… chills. enters an interactive loop 🌀 waiting for you to type in commands so it can send them over to the daemon.

and if you're like "okay but what do I even type tho" — go read the User's Guide for the HMMER Daemon, because that's where hmmpgmd's command format is discussed in full. iykyk 📖

💅 OPTIONS 💅

  • -i <IP address> — tells hmmc2 which IP address of the daemon it should connect to. if you don't provide one, it defaults to 127.0.0.1. classic localhost behaviour, we love her 🏠
  • -p <port number> — tells it the port number that the daemon is listening on. don't provide it? it defaults to 51371. periodt 🔌
  • -S — prints the scores of any hits found during searches. numbers!! give me the numbers 📊
  • -A — prints the alignment of any hits found during searches. and heads up bestie, this is a superset of the -S flag, so providing both is straight up redundant. pick one, you don't need both 🙈

👑 SEE ALSO 👑

  • hmmer(1) — the master man page, the main character, the one with a list of all the individual man pages for programs in the HMMER package. start there if you're lost 🧭
  • for complete documentation, see the user guide that came with your HMMER distribution (Userguide.pdf) 📄
  • or just go look at the HMMER web page: http://hmmer.org/ 🌈

Copyright (C) 2020 Howard Hughes Medical Institute.

Freely distributed under the BSD open source license. slay, open source 💖

for additional info on copyright and licensing, see the file called COPYRIGHT in your HMMER source distribution, or check the HMMER web page (http://hmmer.org/). the receipts are all there 🧾

🌟 AUTHOR 🌟

http://eddylab.org — that's the whole author line, iconic behaviour honestly 👑

and that's a wrap on hmmc2(1), from HMMER 3.3.2, dated Nov 2020 💜 go connect to a daemon and be your main character self, bestie 🦋✨

📦 where this page comes from