SPEC2NII-BRUKER(1)

💖 spec2nii-bruker — the manual, but make it cute 💖

okay bestie, sit down, hydrate, and let me tell you about spec2nii-bruker, aka the spec2nii bruker subcommand, aka the girl whose whole job is converting stuff out of Bruker data format. she's part of the spec2nii family (that's the User Commands crew) and she is, frankly, iconic. 🎀

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✨ SYNOPSIS ✨

spec2nii bruker [-h] [-q QUERY] [-m {2DSEQ,FID}] [-d] [-j] [-f FILEOUT]
[-o OUTDIR] [--nifti1]
[--override_nucleus OVERRIDE_NUCLEUS [OVERRIDE_NUCLEUS ...]]
[--override_frequency OVERRIDE_FREQUENCY [OVERRIDE_FREQUENCY ...]]
[--override_dwelltime OVERRIDE_DWELLTIME] [--anon] [--verbose] file

like… she said "here's my whole personality in one synopsis" and honestly? she ate. 🫶

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🌸 OPTIONS 🌸

🍓 POSITIONAL ARGUMENTS 🍓

• file — the 2dseq file you want converted. that's the one, that's the girl. drop her in and let the conversion happen. ✨

💅 OPTIONAL ARGUMENTS 💅

• -h, --help — shows you a help message and then dips (exits). your little emotional support flag. 💖
• -q QUERY, --query QUERY — no description in the original, so I'm not gonna make one up, bestie. she's mysterious. she's giving enigmatic. 🙈
• -m {2DSEQ,FID}, --mode {2DSEQ,FID} — again, no description given. the manpage just… presents her. and honestly, we respect a silent icon. 💀
• -d, --dump_headers — dumps the bruker header files into a json header extension. like spilling the tea, but in JSON. 📋✨
• -j, --json — creates a json sidecar. a lil companion file. a plus-one. 🎀
• -f FILEOUT, --fileout FILEOUT — sets the output file base name. default is input file name, so if you don't say anything she just uses the input's name. lowkey considerate. 💅
• -o OUTDIR, --outdir OUTDIR — where the output goes. default is . (as in, right here, where you're standing). 🏠
• --nifti1 — that's it. that's the flag. no description in the original. she's there, she's real, she's --nifti1. ⭐
• --override_nucleus OVERRIDE_NUCLEUS [OVERRIDE_NUCLEUS ...] — overrides the ResonantNucleus field with whatever input(s) you pass. e.g. '2H'. one or many, she's flexible like that. 🧪
• --override_frequency OVERRIDE_FREQUENCY [OVERRIDE_FREQUENCY ...] — overrides the SpectrometerFrequency field with your input(s). input is in MHz. ⚡
• --override_dwelltime OVERRIDE_DWELLTIME — overrides the dwell time field with your input. input is in seconds. ⏱️
• --anon — creates the file without sensitive metadata. and listen, if you want greater control over the anon situation, use spec2nii-anon(1) instead, fr fr. 🔒
• --verbose — no description in the original. she just talks more. we love a chatty queen. 🗣️👑

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👑 SEE ALSO 👑

• spec2nii(1)
• spec2nii-auto(1), spec2nii-twix(1), spec2nii-dicom(1), spec2nii-rda(1), spec2nii-uih(1), spec2nii-philips(1), spec2nii-philips_dl(1), spec2nii-philips_dcm(1), spec2nii-ge(1), spec2nii-text(1), spec2nii-jmrui(1), spec2nii-raw(1), spec2nii-varian(1), spec2nii-anon(1), spec2nii-dump(1), spec2nii-extract(1), spec2nii-insert(1), spec2nii-clean(1)

the whole extended family came to the function. no gatekeeping in this household. 🌈

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okay that's the whole page bestie, you're officially fluent in spec2nii-bruker 💖 this lil manual is dated April 2026 and it lives under the name SPEC2NII-BRUKER(1) — go convert something and slay, periodt. 💅✨🦋