SPEC2NII-AUTO(1)

💖 spec2nii-auto — bestie's guide to the auto-convert page 💖

okay so this is the manual for spec2nii-auto, a User Commands page from the spec2nii fam, and it is literally the "let the computer figure it out" one. The whole vibe? attempt automatic identification and conversion. Like, it looks at your file, goes "hmm yes I know what this is", and converts it. No cap. 🦋

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✨ SYNOPSIS ✨

spec2nii auto [-h] [-j] [-f FILEOUT] [-o OUTDIR] [--nifti1]
[--override_nucleus OVERRIDE_NUCLEUS [OVERRIDE_NUCLEUS ...]]
[--override_frequency OVERRIDE_FREQUENCY [OVERRIDE_FREQUENCY ...]]
[--override_dwelltime OVERRIDE_DWELLTIME] [--auto] [--verbose] file

that's the whole invocation, bestie. one file, and a lil pile of flags. slay. 💅

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🎀 OPTIONS 🎀

🌸 POSITIONAL ARGUMENTS

• file — the file you wanna convert. that's it, that's the one. hand it over 🫶

⭐ OPTIONAL ARGUMENTS

• -h, --help — pops up a help message and then dips. classic.
• -j, --json — makes a json sidecar. sidecar as in the little buddy file that tags along, not the motorcycle situation. 🏍️✨
• -f FILEOUT, --fileout FILEOUT — the base name for your output file. if you don't say anything, the default is the input file name (default = input file name). lowkey convenient.
• -o OUTDIR, --outdir OUTDIR — where the output goes. default is . (as in, right here, right now, current directory energy). 📁
• --nifti1 — no description given in the original, so bestie I am not gonna make one up for you. it's just... there. iconic mysterious behavior. 💀
• --override_nucleus OVERRIDE_NUCLEUS [OVERRIDE_NUCLEUS ...] — overrides the ResonantNucleus field with your input(s). you can pass more than one. e.g. '2H'. very "I know better than the header" of you. 👑
• --override_frequency OVERRIDE_FREQUENCY [OVERRIDE_FREQUENCY ...] — overrides the SpectrometerFrequency field with your input(s). input is in MHz. multiple values allowed, go off. ⚡
• --override_dwelltime OVERRIDE_DWELLTIME — overrides the dwell time field with your input. input is in seconds. just the one value here, bestie.
• --anon — creates the file without sensitive metadata. for greater control, go use spec2nii-anon(1) instead. > privacy is main character energy, protect it. 🔒
• --verbose — no description in the original. it just does the verbose thing. we love a silent but powerful king. 🤫

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🔥 SEE ALSO 🔥

• spec2nii(1)

and the whole entire extended fam, okurrr:

• spec2nii-twix(1), spec2nii-dicom(1), spec2nii-rda(1), spec2nii-uih(1)
• spec2nii-philips(1), spec2nii-philips_dl(1), spec2nii-philips_dcm(1)
• spec2nii-ge(1), spec2nii-text(1), spec2nii-jmrui(1), spec2nii-raw(1)
• spec2nii-bruker(1), spec2nii-varian(1), spec2nii-anon(1)
• spec2nii-dump(1), spec2nii-extract(1), spec2nii-insert(1), spec2nii-clean(1)

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and that's the page, bestie!! 🌈 this one's spec2nii-auto, page SPEC2NII-AUTO(1), dated April 2026. mwah. go convert something cute. 💖✨🎀