RGFA-SIMDEBRUIJN(1)

📦
version 1.3.1 · 2 versions
, in debian trixie, ubuntu resolute, ubuntu stonking

💖 RGFA-SIMDEBRUIJN 💖

okay bestie, welcome to the rgfa-simdebruijn(1) manual page — yes that's the real name, section 1, it's giving command line tool main character energy and we're gonna obsess over it together ✨

✨ NAME ✨

rgfa-simdebruijn — bestie. it simulates de Bruijn graphs. that's the whole vibe. 🦋

🌸 SYNOPSIS 🌸

rgfa-simdebruijn <k> <genome.fas>

two little args, that's it, no drama, we love a low-maintenance icon 💅

🎀 DESCRIPTION 🎀

so basically? it outputs GFA format data that simulates a de Bruijn graph 🧚✨

and the graph is built on top of:

  • the input sequence in <genome.fas> — that's your genome file babe 🌸
  • with k-mer size <k> — the k. the whole k. iconic honestly 👑

that's literally it. feed it a genome and a k, get back a simulated de Bruijn graph in GFA format. no cap. 💖

🔥 SEE ALSO 🔥

  • gfadiff(1) — iykyk, go read it, bestie 🫶
  • rgfa-findcrispr(1) — the crispr one, so slay ✨
  • rgfa-mergelinear(1) — for when the linear stuff needs merging 💜

💀 BUGS 💀

found a bug? NOT the vibe 😭 pls don't suffer in silence, report it to the RGFA issue tracker:

https://github.com/ggonnella/rgfa/issues

they will literally thank you for it fr fr 🍓

and that's a wrap on our little RGFA-SIMDEBRUIJN(1) moment — that same name is stamped at the bottom of the original page as the footer, so consider this your lil' sign-off: same manual, same name, same section 1 energy, just infinitely cuter 💅🎀✨ go simulate some de Bruijn graphs bestie, periodt 💖

📦 where this page comes from