GTHSPLIT(1)

💖 NAME 💖

gthsplit — split GenomeThreader output files. that's the whole point, bestie. This is the GTHSPLIT(1) manual page, and we're gonna keep every single detail while making it cute. 🫶

🛠️ SYNOPSIS 🛠️

gthsplit  -alignmentscore | -coverage [option ...] [file ...]

📖 DESCRIPTION 📖

Split GenomeThreader output files containing intermediate results. fr fr, that's what it does — no cap. It takes those files with intermediate results and splits them. ✨

⚙️ OPTIONS ⚙️

• -alignmentscore — split according to the overall alignment score (scr) default: no. scr = overall alignment score, iykyk.
• -coverage — split according to coverage (cov) default: no. cov = coverage, she's giving metrics 💅
• -range — set the percentage range used to create the sets default: 5. default is 5, that's the percentage range vibe ✨
• -minalignmentscore — set the minimum alignment score for spliced alignments to be included into the set of spliced alignments default: 0.00. min alignment score = 0.00 by default 🍓
• -maxalignmentscore — set the maximum alignment score for spliced alignments to be included into the set of spliced alignments default: 1.00. max alignment score = 1.00 by default 👑
• -mincoverage — set the minimum coverage for spliced alignments to be included into the set of spliced alignments default: 0.00. min coverage = 0.00 by default 🌈
• -maxcoverage — set the maximum coverage for spliced alignments to be included into the set of spliced alignments default: 9999.99. max coverage = 9999.99 by default 💖
• -v — be verbose default: no. verbose = no by default, so she's quiet unless u ask 🎀
• -gzip — write gzip compressed output file(s) default: no. gzip = no by default 🧚
• -bzip2 — write bzip2 compressed output file(s) default: no. bzip2 = no by default 🦋
• -force — force writing to split files default: no. forcing writes = off by default 💀
• -help — display help and exit. help = yes pls 🙈
• -version — display version information and exit. version = cute lil flex ✨

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