GTHFILESTAT(1)

✨ GTHFILESTAT(1) ✨

okay so bestie, gather round, because we're talking about gthfilestat from the GenomeThreader family — it's the 1 section manual page, aka user commands, aka the stuff you just run. no cap 💅

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🌸 NAME 🌸

gthfilestat — the way that it shows you statistics about consensus spliced alignments. that's literally its whole thing. it's giving data girlie 📊✨

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🎀 SYNOPSIS 🎀

gthfilestat [option ...] [file ...]

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🦋 DESCRIPTION 🦋

so basically, gthfilestat shows statistics about spliced alignments inside GenomeThreader output files that contain intermediate results. that's it. that's the vibe. it reads your output files and tells you the numbers, and honestly? iconic. 🫶

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👑 OPTIONS 👑

one bullet per flag, no skipping, we respect the whole list here 💖

• -minalignmentscore — sets the minimum alignment score for spliced alignments to be included in the set of spliced alignments. default: 0.00
• -maxalignmentscore — sets the maximum alignment score for spliced alignments to be included in the set of spliced alignments. default: 1.00
• -mincoverage — sets the minimum coverage for spliced alignments to be included in the set of spliced alignments. default: 0.00
• -maxcoverage — sets the maximum coverage for spliced alignments to be included in the set of spliced alignments. default: 9999.99
• -v — be verbose. default: no
• -help — display help and exit. bestie behavior fr fr 🙈
• -version — display version information and exit. we love a quick lil fact check ✨

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heads up: those min/max pairs work as filters, so anything outside your window is just not getting counted, periodt. no shade, that's just how you narrow the set. 💀

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and that's a wrap on gthfilestat! the little GTHFILESTAT(1) at the bottom is just the manual name waving bye-bye — no extra version stamp or date hiding down there, so don't come for me about it. stay slay, read your stats, and go off, you absolute main character 🌈💜