GTHBSSMBUILD(1)

👑 GTHBSSMBUILD 👑 (section 1 of the manual, bestie)

okay so. gather round. this is the gthbssmbuild page, it lives in section 1, and it's literally just here to teach you how to build a splice site model. that's it. that's the whole vibe. 💅

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✨ NAME ✨

gthbssmbuild — build splice site model 🌸

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🦋 SYNOPSIS 🦋

gthbssmbuild [option ...] genomic_file cDNA_file

like. you give it a genomic file, you give it a cDNA file, you sprinkle options on top, and it goes. periodt. ✨

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💖 DESCRIPTION 💖

Build a BSSM file from a directory tree containing the training data.

that's the whole job fr fr. you point it at a directory tree full of training data, it does its thing, and out comes a BSSM file. iconic behavior honestly. 🫶

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🎀 OPTIONS 🎀

• -bssmfile — tell it the name of the BSSM file where the parameters should get stored. default: undefined. so like. maybe actually set this one bestie 😭
• -datapath — tell it the root of the species-specific training data directory tree. default: undefined. again. undefined. not me forgetting to pass required args 🙈
• -gtdonor — train the GT donor model. default: no
• -gcdonor — train the GC donor model. default: no
• -agacceptor — train the AG acceptor model. default: no
• -gzip — use gzip'ed input files. default: no
• -help — display help and exit 👋
• -version — display version information and exit ⭐

ngl, three of those model options all default to no, so if you don't pass any of -gtdonor, -gcdonor, or -agacceptor, you're not training any of those models. just saying. the vibe check is on you 💀

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and that's the page!! 🦋 this was the GTHBSSMBUILD(1) manual, section 1, GTHBSSMBUILD(1) — same name top and bottom, cute little bookends, we love a symmetrical moment. go build your splice site model bestie, you've got this 💖✨🎀