📦 qtltools

16 pages

Q

QTLtools(1)A complete tool set for molecular QTL discovery and analysis✨
QTLtools-ase(1)Measure ASE from RNA-seq✨
QTLtools-bamstat(1)Calculate stats of overlap between an RNAseq BAM file and an annotation✨
QTLtools-cis(1)cis QTL analysis✨
QTLtools-correct(1)Corrects genotypes or phenotypes with the provided covariates✨
QTLtools-extract(1)Data extraction mode.✨
QTLtools-fdensity(1)Functional density around molecular QTLs✨
QTLtools-fenrich(1)Functional enrichment of molecular QTLs✨
QTLtools-gwas(1)Genome-wide association tests✨
QTLtools-mbv(1)Match genotypes in a VCF to a BAM file✨
QTLtools-pca(1)Conducts PCA✨
QTLtools-quan(1)Quantify gene and exon expression from RNA-seq✨
QTLtools-rep(1)Replicate QTL associations in an independent dataset✨
QTLtools-rtc(1)Regulatory Trait Concordance score analysis✨
QTLtools-rtc-union(1)Find the union of QTLs from independent datasets✨
QTLtools-trans(1)trans QTL analysis✨