📦 python3-htseq

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  • htseq-count(1)Count the number of reads in a SAM alignment file that map to GFF features Given a file with aligned sequencing reads and a list of genomic features, a common task is to count how many reads map to…✨
  • htseq-qa(1)Perform simple quality assessment of high-throughput sequencing reads The Python script htseq-qa takes a file with sequencing reads (either raw or aligned reads) and produces a PDF file with useful…✨