📦 prime-phylo

C

• chainsaw(1)Cut a gene tree based on a reconciliation✨

M

• mcmc_analysis(1)Analysis of the MCMC✨

P

• primeDLRS(1)Guest-in-host tree reconciliation tool✨
• primeDTLSR(1)Guest-in-host tree inference tool✨
• primeGEM(1)Guest-in-host tree reconciliation tool✨
• primeGSRf(1)Guest-in-host tree reconciliation tool✨

R

• reconcile(1)This program outputs the reconciliation that minimizes the number of duplications✨
• reroot(1)Compute a (new) root for the tree.✨

S

• showtree(1)View and/or convert phylogenetic trees in the terminal.✨

T

• tree2leafnames(1)List the leaves of a tree✨
• treesize(1)Count the leaves of trees.✨