📦 libstaden-read

24 pages

E

exp2read(3)Translate to and from the Read structure.✨
ExperimentFile(3)Manipulations of the Experiment File format✨

F

fread_reading(3)Read a trace file into a Read structure.✨
fread_scf(3)Read SCF files✨
fwrite_reading(3)Write a Read structure into a trace file.✨
fwrite_scf(3)Write SCF files✨

R

Read(4)Read a trace file into a Read structure.✨
read2exp(3)Translate to and from the Read structure.✨
read2scf(3)Translate to and from the Read structure.✨
read_allocate(3)Allocate and deallocate the Read structure.✨
read_deallocate(3)Allocate and deallocate the Read structure.✨
read_reading(3)Read a trace file into a Read structure.✨
read_scf(3)Read SCF files✨
read_scf_header(3)Read SCF files✨

S

scf2read(3)Translate to and from the Read structure.✨
scramble(1)Converts between the SAM, BAM and CRAM file formats.✨
srf2fasta(1)Converts SRF files to fasta format✨
srf2fastq(1)Converts SRF files to Sanger fastq format✨
srf_index_hash(1)Adds a hash-table index to an SRF file.✨
srf_info(1)Lists information about the contents of an SRF file✨
srf_list(1)Lists and/or counts the contents of an SRF file✨

W

write_reading(3)Write a Read structure into a trace file.✨
write_scf(3)Write SCF files✨
write_scf_header(3)Write SCF files✨