📦 hhsuite

7 pages

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  • hhalign(1)align a query alignment/HMM to a template alignment/HMM✨
  • hhblits(1)fast homology detection method to iteratively search a HMM database✨
  • hhblits_omp(1)fast homology detection method to iteratively search a HMM database✨
  • hhconsensus(1)calculate the consensus sequence for an A3M/FASTA input file✨
  • hhfilter(1)filter an alignment by maximum sequence identity of match states and minimum coverage✨
  • hhmake(1)build an HMM from an input alignment or convert between HMMER format and HHsearch format✨
  • hhsearch(1)search a database of HMMs with a query alignment or query HMM✨