📦 fasta3

6 pages

F

  • fasta36(1)scan a protein or DNA sequence library for similar sequences fastx36 - compare a DNA sequence to a protein sequence database, comparing the translated DNA sequence in forward and reverse frames…✨
  • fastf3(1)compare a mixed peptide sequence against a protein database using a modified fasta algorithm. tfastf3, tfastf3_t - compare a mixed pepide sequence against a translated DNA database.✨
  • fasts3(1)compare several short peptide sequences against a protein database using a modified fasta algorithm. tfasts3, tfasts3_t - compare short pepides against a translated DNA database.✨

M

  • map_db(1)read a FASTA (0), GENBANK flat file (1) PIR/VMS (5) or GCG binary (6) sequence database and produce the offsets necessary for efficient memory mapping.✨

P

  • prss3(1)test a protein sequence similarity for significance✨
  • ps_lav(1)plot an "lav" file in postscript.✨