📦 easel

E

• esl-afetch(1)retrieve alignments from a multi-MSA database✨
• esl-alimanip(1)manipulate a multiple sequence alignment✨
• esl-alimap(1)map two alignments to each other✨
• esl-alimask(1)remove columns from a multiple sequence alignment✨
• esl-alimerge(1)merge alignments based on their reference (RF) annotation✨
• esl-alipid(1)calculate pairwise percent identities for all sequence pairs in an MSA✨
• esl-alirev(1)reverse complement a multiple alignment✨
• esl-alistat(1)summarize a multiple sequence alignment file✨
• esl-compalign(1)compare two multiple sequence alignments✨
• esl-compstruct(1)calculate accuracy of RNA secondary structure predictions✨
• esl-construct(1)describe or create a consensus secondary structure✨
• esl-histplot(1)collate data histogram, output xmgrace datafile✨
• esl-mask(1)mask sequence residues with X's (or other characters)✨
• esl-mixdchlet(1)fitting mixture Dirichlets to count data✨
• esl-reformat(1)convert sequence file formats✨
• esl-selectn(1)select random subset of lines from file✨
• esl-seqrange(1)determine a range of sequences for one of many parallel processes✨
• esl-seqstat(1)summarize contents of a sequence file✨
• esl-sfetch(1)retrieve (sub-)sequences from a sequence file✨
• esl-shuffle(1)shuffling sequences or generating random ones✨
• esl-ssdraw(1)create postscript secondary structure diagrams✨
• esl-translate(1)translate DNA sequence in six frames into individual ORFs✨
• esl-weight(1)calculate sequence weights in MSA(s)✨