📦 ea-utils

A

• alc(1)the aMule eD2k link creator✨

D

• determine-phred(1)ea-utils: read sam, fastq or pileup and return the phred-scale✨

E

• ea-alc(1)ea-utils: Approximate line counts for each file.✨

F

• fastq-clipper(1)ea-utils: removes one or more adapter sequences from the fastq file✨
• fastq-join(1)ea-utils: join two paired-end reads on the overlapping ends✨
• fastq-mcf(1)ea-utils: detect levels of adapter presence, compute likelihoods and locations of the adapters✨
• fastq-multx(1)ea-utils: replace % with the barcode id in the barcodes file✨
• fastq-stats(1)ea-utils: produce lots of easily digested statistics✨
• fastx-graph(1)ea-utils: R script to process fastq-stats output✨

R

• randomFQ(1)ea-utils: return random entries from the input fastq✨

S

• sam-stats(1)ea-utils: produce digested statistics✨

V

• varcall(1)ea-utils: output summry stats or perform variant calling✨