📦 cmtk

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• cmtk(1)the Computational Morphometry Toolkit✨
• cmtk-asegment(1)Atlas-based segmentation✨
• cmtk-asegment_sri24(1)Segmentation using SRI24 atlas✨
• cmtk-average_affine(1)Average affine transformations✨
• cmtk-average_images(1)Average images✨
• cmtk-average_labels(1)Label image averaging✨
• cmtk-avg_adm(1)Average using ADM✨
• cmtk-concat_affine(1)Concatenate affine transformations✨
• cmtk-convert_warp(1)Convert nonrigd transformations.✨
• cmtk-convertx(1)Convert between image file formats and data types.✨
• cmtk-dbtool(1)Image/transformation database maintenance and query tool✨
• cmtk-dcm2image(1)DICOM to Image✨
• cmtk-describe(1)Describe image and transformation file formats and parameters✨
• cmtk-destripe(1)Destripe volume image data.✨
• cmtk-detect_adni_phantom(1)Detect ADNI phantom landmarks in phantom image✨
• cmtk-detect_spheres_matched_filter(1)Detect spheres✨
• cmtk-dof2mat(1)Degrees of freedom to matrix✨
• cmtk-dwi_mask_bad_slices(1)Find bad slices in set of diffusion-weighted images.✨
• cmtk-epiunwarp(1)Unwarp Echo Planar Images✨
• cmtk-fib2image(1)Draw image from point coordinates of fiber tracks from .fib file.✨
• cmtk-fibxform(1)Apply coordinate transformations to point coordinates in .fib file.✨
• cmtk-film(1)Fix interleaved motion using inverse interpolation✨
• cmtk-filter(1)Filter a volume image✨
• cmtk-fit_affine_dfield(1)Fit Affine Transformation to Nonrigid Transformation✨
• cmtk-fit_affine_xform(1)Fit Single Affine Transformation to Concatenated List✨
• cmtk-fit_affine_xform_landmarks(1)Fit Affine Transformation to Landmarks✨
• cmtk-fit_spline_dfield(1)Deformation Field to Transformation✨
• cmtk-fit_spline_xform(1)Fit Single B-Spline Transformation to Concatenated Transformation List✨
• cmtk-geomatch(1)Check whether the geometries (e.g., grid dimensions, pixel sizes, spatial coordinates) or two or more images match.✨
• cmtk-glm(1)General Linear Model✨
• cmtk-gmm(1)Gaussian mixture model segmentation✨
• cmtk-gregxform(1)Apply coordinate transformations to lists of point coordinates✨
• cmtk-groupwise_affine(1)Affine population registration✨
• cmtk-groupwise_init(1)Affine initialization for groupwise registration✨
• cmtk-groupwise_warp(1)Nonrigid population registration✨
• cmtk-hausdorff(1)Hausdorff Distance.✨
• cmtk-histogram(1)Image histogram✨
• cmtk-imagemath(1)Image operations✨
• cmtk-interleaved_bad_slices(1)Find bad slices in a time series of interleaved images (e.g., a resting-state fMRI series).✨
• cmtk-iterative_shape_averaging(1)✨
• cmtk-jidb(1)Fix interleaved motion using joint iterative deblurring✨
• cmtk-levelset(1)Levelset segmentation✨
• cmtk-lmsba(1)Local voting.✨
• cmtk-lsba(1)Local voting.✨
• cmtk-lvote(1)Local voting.✨
• cmtk-make_initial_affine(1)Initialize affine transformation✨
• cmtk-mat2dof(1)Matrix to degrees of freedom✨
• cmtk-mcaffine(1)Multi-channel affine registration✨
• cmtk-mcwarp(1)Multi-channel nonrigid registration✨
• cmtk-mk_adni_phantom(1)Generate ADNI phantom image✨
• cmtk-mk_analyze_hdr(1)Make Analyze header file✨
• cmtk-mk_nifti_hdr(1)Make NIFTI header file✨
• cmtk-mk_phantom_3d(1)Generate phantom image✨
• cmtk-mrbias(1)MR Image Intensity Bias Field Correction✨
• cmtk-overlap(1)Overlap computation✨
• cmtk-probe(1)Probe image data.✨
• cmtk-pxsearch(1)Search image neighborhoods for pixels.✨
• cmtk-reformatx(1)Volume reformatter✨
• cmtk-registration(1)Rigid and affine registration✨
• cmtk-registrationx(1)Rigid and affine registration✨
• cmtk-regress(1)Regression✨
• cmtk-reorient(1)Reorientation✨
• cmtk-sba(1)Shape-based Averaging of label images✨
• cmtk-sbai(1)Shape-Based Averaging and interpolation of label images✨
• cmtk-sequence(1)Value sequence✨
• cmtk-similarity(1)Image similarity✨
• cmtk-split(1)Split images✨
• cmtk-statistics(1)Image statistics✨
• cmtk-stream_pixels(1)Stream pixel data from one or more images to Standard Output.✨
• cmtk-streamxform(1)Apply coordinate transformation to point coordinates from text stream.✨
• cmtk-sympl(1)Symmetry plane computation✨
• cmtk-symplx(1)Symmetry plane computation✨
• cmtk-ttest(1)T-tests✨
• cmtk-unsplit(1)Unsplit images✨
• cmtk-unwarp_image_phantom(1)Create transformation to unwarp an image based on a phantom description✨
• cmtk-vol2csv(1)Compute regional volumes and write to CSV file.✨
• cmtk-volume_injection(1)Volume injection✨
• cmtk-volume_reconstruction(1)Volume reconstruction✨
• cmtk-vtkxform(1)Apply coordinate transformation to point coordinates in VTK file.✨
• cmtk-warp(1)B-spline nonrigid registration✨
• cmtk-warp2ps(1)Deformation to PostScript✨
• cmtk-warpx(1)B-spline nonrigid registration✨
• cmtk-xform2dfield(1)Transformation to Deformation Field✨
• cmtk-xform2itk(1)Convert affine transformations to ITK format.✨
• cmtk-xform2scalar(1)Extract scalar measures from transformations and deformation fields✨