📦 chado-utils

G

• gmod_add_organism.pl(1p)Adds an entry to the organism table✨
• gmod_bulk_load_gff3.pl(1p)Bulk loads gff3 files into a chado database.✨
• gmod_bulk_load_pubmed.pl(1p)stores pubmed entries in the database✨
• gmod_chado_properties.pl(1p)reads or modifies the chadoprop table✨
• gmod_extract_dbxref_from_gff.pl(1p)Extracts Dbxrefs from GFF3 lines that have Target attributes✨
• gmod_fasta2gff3.pl(1p)Convert FASTA to simple GFF3✨
• gmod_gff3_preprocessor.pl(1p)Prepares a GFF3 file for bulk loading into a chado database.✨
• gmod_load_cvterms.pl(1p)compares which terms are new in the file compared to the database and inserts them✨
• gmod_make_cvtermpath.pl(1p)calculates the transitive closure on the ontology terms in the cvterm table✨
• gmod_make_gff_from_dbxref.pl(1p)a tool for creating a gff3 file given a list of dbxrefs and fasta files.✨
• gmod_materialized_view_tool.pl(1p)a tool for creating and mangaing materialized views for Chado.✨
• gmod_sort_gff3.pl(1p)Sorts a GFF3 file to put lines with Parent tags after their parent.✨