📦 bbmap

B

• bbduk.sh(1)Filters, trims, or masks reads with kmer matches to an artifact/contaminant file✨
• bbmap.sh(1)Fast and accurate splice-aware read aligner.✨
• bbnorm.sh(1)Kmer-based error-correction and normalization tool✨
• bloomfilter.sh(1)Filters reads potentially sharing a kmer with a reference✨

D

• dedupe.sh(1)Simplifies assemblies by removing duplicate or contained✨

R

• reformat.sh(1)Reformats reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64✨