PARALLEL_TUTORIAL(7)

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πŸ’– PARALLEL_TUTORIAL(7) πŸ’– β€” GNU Parallel Tutorial (the one that makes you unstoppable)

okay so bestie, welcome to the GNU Parallel tutorial!! πŸŽ€ This is where you learn the options and the syntax of GNU parallel, like actually learn them. Heads up tho: this tutorial is NOT trying to show you realistic real-world examples. It's here to teach you the moves. Periodt. πŸ’…


πŸ“– Reader's guide (iykyk)

If you're more of a book girlie, you can buy GNU Parallel 2018 at:

https://www.lulu.com/shop/ole-tange/gnu-parallel-2018/paperback/product-23558902.html

or download it at:

https://doi.org/10.5281/zenodo.1146014

Otherwise, start by watching the intro videos for a quick intro, no cap:

https://www.youtube.com/playlist?list=PL284C9FF2488BC6D1

Then go browse the examples (man parallel_examples) β€” that's where you'll get a feel for what GNU parallel can actually do. Lowkey iconic behavior.

Wanna go even deeper? πŸ¦‹ Spend a couple of hours walking through the tutorial (man parallel_tutorial). Your command line will literally love you for it.

And finally, if you've got special needs that aren't covered yet, go look at the rest of the manual (man parallel).

If you're curious about the design decisions behind GNU parallel, try man parallel_design. It's also a great intro if you're planning to change GNU parallel. Main character energy fr fr.


✨ Prerequisites ✨

To run this tutorial you must have the following, bestie:

  • parallel >= version 20160822 β€” Install the newest version using your package manager (recommended for security reasons πŸ’–), the way described in README, or with this command:
$ (wget -O - pi.dk/3 || lynx -source pi.dk/3 || curl pi.dk/3/ || \
   fetch -o - http://pi.dk/3 ) > install.sh
$ sha1sum install.sh
12345678 51621b7f 1ee103c0 0783aae4 ef9889f8
$ md5sum install.sh
62eada78 703b5500 241b8e50 baf62758
$ sha512sum install.sh
160d3159 9480cf5c a101512f 150b7ac0 206a65dc 86f2bb6b bdf1a2bc 96bc6d06
7f8237c2 0964b67f bccf8a93 332528fa 11e5ab43 2a6226a6 ceb197ab 7f03c061
$ bash install.sh

This will also install the newest version of the tutorial, which you can see by running this:

man parallel_tutorial

Most of the tutorial will work on older versions, too. 🫢

  • abc-file: β€” The file can be generated by this command:
parallel -k echo ::: A B C > abc-file
  • def-file: β€” The file can be generated by this command:
parallel -k echo ::: D E F > def-file
  • abc0-file: β€” The file can be generated by this command:
perl -e 'printf "A\0B\0C\0"' > abc0-file
  • abc_-file: β€” The file can be generated by this command:
perl -e 'printf "A_B_C_"' > abc_-file
  • tsv-file.tsv β€” The file can be generated by this command:
perl -e 'printf "f1\tf2\nA\tB\nC\tD\n"' > tsv-file.tsv
  • num8 β€” The file can be generated by this command:
perl -e 'for(1..8){print "$_\n"}' > num8
  • num128 β€” The file can be generated by this command:
perl -e 'for(1..128){print "$_\n"}' > num128
  • num30000 β€” The file can be generated by this command:
perl -e 'for(1..30000){print "$_\n"}' > num30000
  • num1000000 β€” The file can be generated by this command:
perl -e 'for(1..1000000){print "$_\n"}' > num1000000
  • num_%header β€” The file can be generated by this command:
(echo %head1; echo %head2; \
 perl -e 'for(1..10){print "$_\n"}') > num_%header
  • fixedlen β€” The file can be generated by this command:
perl -e 'print "HHHHAAABBBCCC"' > fixedlen
  • For remote running: ssh login on 2 servers with no password in $SERVER1 and $SERVER2 must work.
SERVER1=server.example.com
SERVER2=server2.example.net

So you must be able to do this without entering a password:

ssh $SERVER1 echo works
ssh $SERVER2 echo works

It can be setup by running ssh-keygen -t dsa; ssh-copy-id $SERVER1 and using an empty passphrase, or you can use ssh-agent.


🌈 Input sources 🌈

GNU parallel reads input from input sources. These can be files, the command line, and stdin (standard input or a pipe). Three whole vibes.

🌸 A single input source

Input can be read from the command line:

parallel echo ::: A B C

Output (the order may be different because the jobs are run in parallel):

A
B
C

The input source can be a file:

parallel -a abc-file echo

Output: Same as above.

STDIN (standard input) can be the input source:

cat abc-file | parallel echo

Output: Same as above.

πŸ¦‹ Multiple input sources

GNU parallel can take multiple input sources given on the command line. GNU parallel then generates all combinations of the input sources:

parallel echo ::: A B C ::: D E F

Output (the order may be different):

A D
A E
A F
B D
B E
B F
C D
C E
C F

The input sources can be files:

parallel -a abc-file -a def-file echo

Output: Same as above.

STDIN (standard input) can be one of the input sources using -:

cat abc-file | parallel -a - -a def-file echo

Output: Same as above.

Instead of -a files can be given after :::::

cat abc-file | parallel echo :::: - def-file

Output: Same as above.

::: and :::: can be mixed:

parallel echo ::: A B C :::: def-file

Output: Same as above.

πŸ”— Linking arguments from input sources

With --link you can link the input sources and get one argument from each input source:

parallel --link echo ::: A B C ::: D E F

Output (the order may be different):

A D
B E
C F

If one of the input sources is too short, its values will wrap:

parallel --link echo ::: A B C D E ::: F G

Output (the order may be different):

A F
B G
C F
D G
E F

For more flexible linking you can use :::+ and ::::+. They work like ::: and :::: except they link the previous input source to this input source.

This will link ABC to GHI:

parallel echo :::: abc-file :::+ G H I :::: def-file

Output (the order may be different):

A G D
A G E
A G F
B H D
B H E
B H F
C I D
C I E
C I F

This will link GHI to DEF:

parallel echo :::: abc-file ::: G H I ::::+ def-file

Output (the order may be different):

A G D
A H E
A I F
B G D
B H E
B I F
C G D
C H E
C I F

If one of the input sources is too short when using :::+ or ::::+, the rest will be ignored:

parallel echo ::: A B C D E :::+ F G

Output (the order may be different):

A F
B G

πŸ’… Changing the argument separator.

GNU parallel can use other separators than ::: or ::::. This is typically useful if ::: or :::: is used in the command to run:

parallel --arg-sep ,, echo ,, A B C :::: def-file

Output (the order may be different):

A D
A E
A F
B D
B E
B F
C D
C E
C F

Changing the argument file separator:

parallel --arg-file-sep // echo ::: A B C // def-file

Output: Same as above.

πŸ“ Changing the argument delimiter

GNU parallel will normally treat a full line as a single argument: It uses \n as argument delimiter. This can be changed with -d:

parallel -d _ echo :::: abc_-file

Output (the order may be different):

A
B
C

NUL can be given as \0:

parallel -d '\0' echo :::: abc0-file

Output: Same as above.

A shorthand for -d '\0' is -0 (this will often be used to read files from find ... -print0):

parallel -0 echo :::: abc0-file

Output: Same as above.

πŸŽ€ End-of-file value for input source

GNU parallel can stop reading when it encounters a certain value:

parallel -E stop echo ::: A B stop C D

Output:

A
B

✨ Skipping empty lines

Using --no-run-if-empty GNU parallel will skip empty lines.

(echo 1; echo; echo 2) | parallel --no-run-if-empty echo

Output:

1
2

πŸ‘‘ Building the command line πŸ‘‘

🌟 No command means arguments are commands

If no command is given after parallel the arguments themselves are treated as commands:

parallel ::: ls 'echo foo' pwd

Output (the order may be different):

[list of files in current dir]
foo
[/path/to/current/working/dir]

The command can be a script, a binary or a Bash function if the function is exported using export -f:

# Only works in Bash
my_func() {
  echo in my_func $1
}
export -f my_func
parallel my_func ::: 1 2 3

Output (the order may be different):

in my_func 1
in my_func 2
in my_func 3

🧚 Replacement strings

⭐ The 7 predefined replacement strings

GNU parallel has several replacement strings. If no replacement strings are used the default is to append {}:

parallel echo ::: A/B.C

Output:

A/B.C

The default replacement string is {}:

parallel echo {} ::: A/B.C

Output:

A/B.C

The replacement string {.} removes the extension:

parallel echo {.} ::: A/B.C

Output:

A/B

The replacement string {/} removes the path:

parallel echo {/} ::: A/B.C

Output:

B.C

The replacement string {//} keeps only the path:

parallel echo {//} ::: A/B.C

Output:

A

The replacement string {/.} removes the path and the extension:

parallel echo {/.} ::: A/B.C

Output:

B

The replacement string {#} gives the job number:

parallel echo {#} ::: A B C

Output (the order may be different):

1
2
3

The replacement string {%} gives the job slot number (between 1 and number of jobs to run in parallel):

parallel -j 2 echo {%} ::: A B C

Output (the order may be different and 1 and 2 may be swapped):

1
2
1

πŸ’œ Changing the replacement strings

The replacement string {} can be changed with -I:

parallel -I ,, echo ,, ::: A/B.C

Output:

A/B.C

The replacement string {.} can be changed with --extensionreplace:

parallel --extensionreplace ,, echo ,, ::: A/B.C

Output:

A/B

The replacement string {/} can be replaced with --basenamereplace:

parallel --basenamereplace ,, echo ,, ::: A/B.C

Output:

B.C

The replacement string {//} can be changed with --dirnamereplace:

parallel --dirnamereplace ,, echo ,, ::: A/B.C

Output:

A

The replacement string {/.} can be changed with --basenameextensionreplace:

parallel --basenameextensionreplace ,, echo ,, ::: A/B.C

Output:

B

okay so the {#} replacement string β€” the lil job counter β€” can be swapped for something else with --seqreplace:

parallel --seqreplace ,, echo ,, ::: A B C

Output (the order may be different):

1
2
3

And {%} β€” the slot girly β€” gets swapped with --slotreplace:

parallel -j2 --slotreplace ,, echo ,, ::: A B C

Output (the order may be different and 1 and 2 may be swapped):

1
2
1

✨ Perl expression replacement string ✨

When the pre-made replacement strings simply are not giving enough, bestie, you can drop an entire perl expression in there instead. Iconic example: yeeting two extensions off at once, so foo.tar.gz becomes foo:

parallel echo '{= s:\.[^.]+$::;s:\.[^.]+$::; =}' ::: foo.tar.gz

Output:

foo

Inside {= =} you get access to literally every single internal function and variable GNU parallel has. A few of them are worth knowing about, fr fr.

total_jobs() returns the total number of jobs:

parallel echo Job {#} of {= '$_=total_jobs()' =} ::: {1..5}

Output:

Job 1 of 5
Job 2 of 5
Job 3 of 5
Job 4 of 5
Job 5 of 5

Q(...) shell quotes the string for you, no cap:

parallel echo {} shell quoted is {= '$_=Q($_)' =} ::: '*/!#$'

Output:

*/!#$ shell quoted is \*/\!\#\$

skip() skips the job. poof, gone, not doing it:

parallel echo {= 'if($_==3) { skip() }' =} ::: {1..5}

Output:

1
2
4
5

@arg contains the input source variables:

parallel echo {= 'if($arg[1]==$arg[2]) { skip() }' =} \
  ::: {1..3} ::: {1..3}

Output:

1 2
1 3
2 1
2 3
3 1
3 2

If the strings {= and =} are causing problems for you, they can be replaced with --parens:

parallel --parens ,,,, echo ',, s:\.[^.]+$::;s:\.[^.]+$::; ,,' \
  ::: foo.tar.gz

Output:

foo

To define a shorthand replacement string use --rpl:

parallel --rpl '.. s:\.[^.]+$::;s:\.[^.]+$::;' echo '..' \
  ::: foo.tar.gz

Output: Same as above.

If the shorthand starts with { it can be used as a positional replacement string, too:

parallel --rpl '{..} s:\.[^.]+$::;s:\.[^.]+$::;' echo '{..}'
  ::: foo.tar.gz

Output: Same as above.

If the shorthand contains matching parenthesis the replacement string becomes a dynamic replacement string, and the string in the parenthesis can be accessed as $$1. If there are multiple matching parenthesis, the matched strings can be accessed using $$2, $$3 and so on.

Think of this as giving arguments to the replacement string. Here we give the argument .tar.gz to the replacement string {%string} which removes string:

parallel --rpl '{%(.+?)} s/$$1$//;' echo {%.tar.gz}.zip ::: foo.tar.gz

Output:

foo.zip

Here we give the two arguments tar.gz and zip to the replacement string {/string1/string2} which replaces string1 with string2:

parallel --rpl '{/(.+?)/(.*?)} s/$$1/$$2/;' echo {/tar.gz/zip} \
  ::: foo.tar.gz

Output:

foo.zip

GNU parallel's 7 replacement strings are implemented as this, bestie, look at the sauce:

--rpl '{} '
--rpl '{#} $_=$job->seq()'
--rpl '{%} $_=$job->slot()'
--rpl '{/} s:.*/::'
--rpl '{//} $Global::use{"File::Basename"} ||=
         eval "use File::Basename; 1;"; $_ = dirname($_);'
--rpl '{/.} s:.*/::; s:\.[^/.]+$::;'
--rpl '{.} s:\.[^/.]+$::'

🌸 Positional replacement strings 🌸

When you've got multiple input sources, the argument from each individual input source can be grabbed with {number}:

parallel echo {1} and {2} ::: A B ::: C D

Output (the order may be different):

A and C
A and D
B and C
B and D

The positional replacement strings can also be modified using /, //, /., and .:

parallel echo /={1/} //={1//} /.={1/.} .={1.} ::: A/B.C D/E.F

Output (the order may be different):

/=B.C //=A /.=B .=A/B
/=E.F //=D /.=E .=D/E

If a position is negative, it refers to the input source counted from behind:

parallel echo 1={1} 2={2} 3={3} -1={-1} -2={-2} -3={-3} \
  ::: A B ::: C D ::: E F

Output (the order may be different):

1=A 2=C 3=E -1=E -2=C -3=A
1=A 2=C 3=F -1=F -2=C -3=A
1=A 2=D 3=E -1=E -2=D -3=A
1=A 2=D 3=F -1=F -2=D -3=A
1=B 2=C 3=E -1=E -2=C -3=B
1=B 2=C 3=F -1=F -2=C -3=B
1=B 2=D 3=E -1=E -2=D -3=B
1=B 2=D 3=F -1=F -2=D -3=B

πŸ’… Positional perl expression replacement string πŸ’…

To use a perl expression as a positional replacement string, simply prepend the perl expression with number and a space:

parallel echo '{=2 s:\.[^.]+$::;s:\.[^.]+$::; =} {1}' \
  ::: bar ::: foo.tar.gz

Output:

foo bar

If a shorthand defined using --rpl starts with { it can be used as a positional replacement string, too:

parallel --rpl '{..} s:\.[^.]+$::;s:\.[^.]+$::;' echo '{2..} {1}' \
  ::: bar ::: foo.tar.gz

Output: Same as above.

πŸ“ Input from columns πŸ“

The columns in a file can be bound to positional replacement strings using --colsep. Here the columns are separated by TAB (\t):

parallel --colsep '\t' echo 1={1} 2={2} :::: tsv-file.tsv

Output (the order may be different):

1=f1 2=f2
1=A 2=B
1=C 2=D

πŸ‘‘ Header defined replacement strings πŸ‘‘

With --header GNU parallel will use the first value of the input source as the name of the replacement string. Only the non-modified version {} is supported:

parallel --header : echo f1={f1} f2={f2} ::: f1 A B ::: f2 C D

Output (the order may be different):

f1=A f2=C
f1=A f2=D
f1=B f2=C
f1=B f2=D

It is useful with --colsep for processing files with TAB separated values:

parallel --header : --colsep '\t' echo f1={f1} f2={f2} \
  :::: tsv-file.tsv

Output (the order may be different):

f1=A f2=B
f1=C f2=D

✨ More pre-defined replacement strings with --plus ✨

--plus adds the replacement strings {+/} {+.} {+..} {+...} {..} {...} {/..} {/...} {##}. The idea being that {+foo} matches the opposite of {foo} and {} = {+/}/{/} = {.}.{+.} = {+/}/{/.}.{+.} = {..}.{+..} = {+/}/{/..}.{+..} = {...}.{+...} = {+/}/{/...}.{+...}.

parallel --plus echo {} ::: dir/sub/file.ex1.ex2.ex3
parallel --plus echo {+/}/{/} ::: dir/sub/file.ex1.ex2.ex3
parallel --plus echo {.}.{+.} ::: dir/sub/file.ex1.ex2.ex3
parallel --plus echo {+/}/{/.}.{+.} ::: dir/sub/file.ex1.ex2.ex3
parallel --plus echo {..}.{+..} ::: dir/sub/file.ex1.ex2.ex3
parallel --plus echo {+/}/{/..}.{+..} ::: dir/sub/file.ex1.ex2.ex3
parallel --plus echo {...}.{+...} ::: dir/sub/file.ex1.ex2.ex3
parallel --plus echo {+/}/{/...}.{+...} ::: dir/sub/file.ex1.ex2.ex3

Output:

dir/sub/file.ex1.ex2.ex3

{##} is simply the number of jobs:

parallel --plus echo Job {#} of {##} ::: {1..5}

Output:

Job 1 of 5
Job 2 of 5
Job 3 of 5
Job 4 of 5
Job 5 of 5

πŸ¦‹ Dynamic replacement strings with --plus πŸ¦‹

--plus also defines these dynamic replacement strings:

  • {:-string} β€” Default value is string if the argument is empty.
  • {:number} β€” Substring from number till end of string.
  • {:number1:number2} β€” Substring from number1 to number2.
  • {#string} β€” If the argument starts with string, remove it.
  • {%string} β€” If the argument ends with string, remove it.
  • {/string1/string2} β€” Replace string1 with string2.
  • {^string} β€” If the argument starts with string, upper case it. string must be a single letter.
  • {^^string} β€” If the argument contains string, upper case it. string must be a single letter.
  • {,string} β€” If the argument starts with string, lower case it. string must be a single letter.
  • {,,string} β€” If the argument contains string, lower case it. string must be a single letter.

They are inspired from Bash:

unset myvar
echo ${myvar:-myval}
parallel --plus echo {:-myval} ::: "$myvar"

myvar=abcAaAdef
echo ${myvar:2}
parallel --plus echo {:2} ::: "$myvar"

echo ${myvar:2:3}
parallel --plus echo {:2:3} ::: "$myvar"

echo ${myvar#bc}
parallel --plus echo {#bc} ::: "$myvar"
echo ${myvar#abc}
parallel --plus echo {#abc} ::: "$myvar"

echo ${myvar%de}
parallel --plus echo {%de} ::: "$myvar"
echo ${myvar%def}
parallel --plus echo {%def} ::: "$myvar"

echo ${myvar/def/ghi}
parallel --plus echo {/def/ghi} ::: "$myvar"

echo ${myvar^a}
parallel --plus echo {^a} ::: "$myvar"
echo ${myvar^^a}
parallel --plus echo {^^a} ::: "$myvar"

myvar=AbcAaAdef
echo ${myvar,A}
parallel --plus echo '{,A}' ::: "$myvar"
echo ${myvar,,A}
parallel --plus echo '{,,A}' ::: "$myvar"

Output:

myval
myval
cAaAdef
cAaAdef
cAa
cAa
abcAaAdef
abcAaAdef
AaAdef
AaAdef
abcAaAdef
abcAaAdef
abcAaA
abcAaA
abcAaAghi
abcAaAghi
AbcAaAdef
AbcAaAdef
AbcAAAdef
AbcAAAdef
abcAaAdef
abcAaAdef
abcaaadef
abcaaadef

πŸ”₯ More than one argument πŸ”₯

With --xargs GNU parallel will fit as many arguments as possible on a single line:

cat num30000 | parallel --xargs echo | wc -l

Output (if you run this under Bash on GNU/Linux):

2

The 30000 arguments fitted on 2 lines. Slay.

The maximal length of a single line can be set with -s. With a maximal line length of 10000 chars 17 commands will be run:

cat num30000 | parallel --xargs -s 10000 echo | wc -l

Output:

17

For better parallelism GNU parallel can distribute the arguments between all the parallel jobs when end of file is met.

Below, GNU parallel reads the last argument when generating the second job. When GNU parallel reads the last argument, it spreads all the arguments for the second job over 4 jobs instead, as 4 parallel jobs are requested.

The first job will be the same as the --xargs example above, but the second job will be split into 4 evenly sized jobs, resulting in a total of 5 jobs:

cat num30000 | parallel --jobs 4 -m echo | wc -l

Output (if you run this under Bash on GNU/Linux):

5

This is even more visible when running 4 jobs with 10 arguments. The 10 arguments are being spread over 4 jobs:

parallel --jobs 4 -m echo ::: 1 2 3 4 5 6 7 8 9 10

Output:

1 2 3
4 5 6
7 8 9
10

A replacement string can be part of a word. -m will not repeat the context:

parallel --jobs 4 -m echo pre-{}-post ::: A B C D E F G

Output (the order may be different):

pre-A B-post
pre-C D-post
pre-E F-post
pre-G-post

To repeat the context use -X, which otherwise works like -m:

parallel --jobs 4 -X echo pre-{}-post ::: A B C D E F G

Output (the order may be different):

pre-A-post pre-B-post
pre-C-post pre-D-post
pre-E-post pre-F-post
pre-G-post

Wanna cap how many args go into each job? That's -N, bestie:

parallel -N3 echo ::: A B C D E F G H

Output (the order may be different):

A B C
D E F
G H

And plot twist: -N also sets your positional replacement strings, so you can address them like {1}, {2}, {3} πŸ’…

parallel -N3 echo 1={1} 2={2} 3={3} ::: A B C D E F G H

Output (the order may be different):

1=A 2=B 3=C
1=D 2=E 3=F
1=G 2=H 3=

And if you're feeling chaotic: -N0 reads 1 argument but inserts none of them. Zero. Nothing. Iconic.

parallel -N0 echo foo ::: 1 2 3

Output:

foo
foo
foo

πŸ’¬ Quoting

Okay so sometimes your command line has special characters in it and the shell is gonna get involved, which is not what you want. Gotta protect it.

The perl program print "@ARGV\n" basically works like echo, fr fr:

perl -e 'print "@ARGV\n"' A

Output:

A

Now try running that in parallel and watch the whole thing eat itself, because the command needs quoting:

parallel perl -e 'print "@ARGV\n"' ::: This wont work

Output:

[Nothing]

Literally nothing. A void. πŸ’€

To quote the command, use -q:

parallel -q perl -e 'print "@ARGV\n"' ::: This works

Output (the order may be different):

This
works

Or you can quote just the critical part with \':

parallel perl -e \''print "@ARGV\n"'\' ::: This works, too

Output (the order may be different):

This
works,
too

GNU parallel can also \-quote full lines. Just run this:

parallel --shellquote
Warning: Input is read from the terminal. You either know what you
Warning: are doing (in which case: YOU ARE AWESOME!) or you forgot
Warning: ::: or :::: or to pipe data into parallel. If so
Warning: consider going through the tutorial: man parallel_tutorial
Warning: Press CTRL-D to exit.
perl -e 'print "@ARGV\n"'
[CTRL-D]

Output:

perl\ -e\ \'print\ \"@ARGV\\n\"\'

And then you can yeet that straight back in as the command:

parallel perl\ -e\ \'print\ \"@ARGV\\n\"\' ::: This also works

Output (the order may be different):

This
also
works

βœ‚οΈ Trimming space

Space on your arguments can be trimmed with --trim:

parallel --trim r echo pre-{}-post ::: ' A '

Output:

pre- A-post

Trim the left side instead:

parallel --trim l echo pre-{}-post ::: ' A '

Output:

pre-A -post

Or trim both sides, because why not:

parallel --trim lr echo pre-{}-post ::: ' A '

Output:

pre-A-post

🐚 Respecting the shell

This tutorial is using Bash as the shell. GNU parallel respects which shell you're using, so in zsh you can do:

parallel echo \={} ::: zsh bash ls

Output:

/usr/bin/zsh
/bin/bash
/bin/ls

In csh you can do:

parallel 'set a="{}"; if( { test -d "$a" } ) echo "$a is a dir"' ::: *

Output:

[somedir] is a dir

This is also super useful if you use GNU parallel in a shell script β€” GNU parallel will use the same shell as the shell script. No cap. 🫢


πŸŽ€ Controlling the output

You can prefix the output with the argument:

parallel --tag echo foo-{} ::: A B C

Output (the order may be different):

A       foo-A
B       foo-B
C       foo-C

Wanna prefix it with something else? That's --tagstring:

parallel --tagstring {}-bar echo foo-{} ::: A B C

Output (the order may be different):

A-bar   foo-A
B-bar   foo-B
C-bar   foo-C

Wanna see what commands would run without actually running them? --dryrun, bestie:

parallel --dryrun echo {} ::: A B C

Output (the order may be different):

echo A
echo B
echo C

And if you want the command printed right before it runs, use --verbose:

parallel --verbose echo {} ::: A B C

Output (the order may be different):

echo A
echo B
A
echo C
B
C

GNU parallel will postpone the output until the command completes:

parallel -j2 'printf "%s-start\n%s" {} {};
  sleep {};printf "%s\n" -middle;echo {}-end' ::: 4 2 1

Output:

2-start
2-middle
2-end
1-start
1-middle
1-end
4-start
4-middle
4-end

To get the output immediately, use --ungroup:

parallel -j2 --ungroup 'printf "%s-start\n%s" {} {};
  sleep {};printf "%s\n" -middle;echo {}-end' ::: 4 2 1

Output:

4-start
42-start
2-middle
2-end
1-start
1-middle
1-end
-middle
4-end
⚠️ --ungroup is fast, but it can cause half a line from one job to get mixed with half a line of another job. That literally happened in the second line up there, where the line 4-middle is mixed with 2-start. Messy.

To avoid that whole situation, use --linebuffer:

parallel -j2 --linebuffer 'printf "%s-start\n%s" {} {};
  sleep {};printf "%s\n" -middle;echo {}-end' ::: 4 2 1

Output:

4-start
2-start
2-middle
2-end
1-start
1-middle
1-end
4-middle
4-end

And to force the output into the same order as the arguments, use --keep-order/-k:

parallel -j2 -k 'printf "%s-start\n%s" {} {};
  sleep {};printf "%s\n" -middle;echo {}-end' ::: 4 2 1

Output:

4-start
4-middle
4-end
2-start
2-middle
2-end
1-start
1-middle
1-end

πŸ“ Saving output into files

GNU parallel can save the output of each job into files:

parallel --files echo ::: A B C

Output will be similar to this:

/tmp/pAh6uWuQCg.par
/tmp/opjhZCzAX4.par
/tmp/W0AT_Rph2o.par

By default GNU parallel caches the output in files in /tmp. You can change that by setting $TMPDIR or with --tmpdir:

parallel --tmpdir /var/tmp --files echo ::: A B C

Output will be similar to this:

/var/tmp/N_vk7phQRc.par
/var/tmp/7zA4Ccf3wZ.par
/var/tmp/LIuKgF_2LP.par

Or:

TMPDIR=/var/tmp parallel --files echo ::: A B C

Output: Same as above. ✨

The output files can also be saved in a structured way using --results:

parallel --results outdir echo ::: A B C

Output:

A
B
C

These files were also generated, containing the standard output (stdout), standard error (stderr), and the sequence number (seq):

outdir/1/A/seq
outdir/1/A/stderr
outdir/1/A/stdout
outdir/1/B/seq
outdir/1/B/stderr
outdir/1/B/stdout
outdir/1/C/seq
outdir/1/C/stderr
outdir/1/C/stdout

--header : will take the first value as the name and use that in the directory structure. This is useful if you're using multiple input sources:

parallel --header : --results outdir echo ::: f1 A B ::: f2 C D

Generated files:

outdir/f1/A/f2/C/seq
outdir/f1/A/f2/C/stderr
outdir/f1/A/f2/C/stdout
outdir/f1/A/f2/D/seq
outdir/f1/A/f2/D/stderr
outdir/f1/A/f2/D/stdout
outdir/f1/B/f2/C/seq
outdir/f1/B/f2/C/stderr
outdir/f1/B/f2/C/stdout
outdir/f1/B/f2/D/seq
outdir/f1/B/f2/D/stderr
outdir/f1/B/f2/D/stdout

The directories are named after the variables and their values. Cute, right? πŸŽ€


πŸ‘‘ Controlling the execution

πŸ”’ Number of simultaneous jobs

How many jobs run at once is set with --jobs/-j:

/usr/bin/time parallel -N0 -j64 sleep 1 :::: num128

With 64 jobs in parallel, those 128 sleeps will take 2-8 seconds to run β€” depending on how fast your machine is.

By default --jobs is the same as the number of CPU cores. So this:

/usr/bin/time parallel -N0 sleep 1 :::: num128

should take twice the time of running 2 jobs per CPU core:

/usr/bin/time parallel -N0 --jobs 200% sleep 1 :::: num128

And --jobs 0 will run as many jobs in parallel as possible:

/usr/bin/time parallel -N0 --jobs 0 sleep 1 :::: num128

which should take 1-7 seconds depending on how fast your machine is.

--jobs can even read from a file, and that file gets re-read every time a job finishes:

echo 50% > my_jobs
/usr/bin/time parallel -N0 --jobs my_jobs sleep 1 :::: num128 &
sleep 1
echo 0 > my_jobs
wait

The first second, only 50% of the CPU cores will run a job. Then 0 gets put into my_jobs, and then the rest of the jobs will be started in parallel. πŸƒβ€β™€οΈ

Instead of basing the percentage on the number of CPU cores, GNU parallel can base it on the number of CPUs:

parallel --use-cpus-instead-of-cores -N0 sleep 1 :::: num8

πŸ”€ Shuffle job order

If you have a lot of jobs (like, multiple combinations of input sources), it can be handy to shuffle them so you get different values running. Use --shuf for that:

parallel --shuf echo ::: 1 2 3 ::: a b c ::: A B C

Output:

All combinations but different order for each run.

πŸ™‹ Interactivity

GNU parallel can ask the user whether a command should be run, using --interactive:

parallel --interactive echo ::: 1 2 3

Output:

echo 1 ?...y
echo 2 ?...n
1
echo 3 ?...y
3

GNU parallel can also put arguments on the command line for an interactive command such as emacs, so you edit one file at a time:

parallel --tty emacs ::: 1 2 3

Or hand over multiple arguments in one go to open multiple files:

parallel -X --tty vi ::: 1 2 3

πŸͺŸ A terminal for every job

Using --tmux, GNU parallel can start a terminal for every job run:

seq 10 20 | parallel --tmux 'echo start {}; sleep {}; echo done {}'

This will tell you to run something similar to:

tmux -S /tmp/tmsrPrO0 attach

Using normal tmux keystrokes (CTRL-b n or CTRL-b p) you can cycle between windows of the running jobs. When a job is finished it will pause for 10 seconds before closing the window.


⏱️ Timing

Some jobs do heavy I/O when they start. To avoid a thundering herd, GNU parallel can delay starting new jobs. --delay X makes sure there's at least X seconds between each start:

parallel --delay 2.5 echo Starting {}\;date ::: 1 2 3

Output:

Starting 1
Thu Aug 15 16:24:33 CEST 2013
Starting 2
Thu Aug 15 16:24:35 CEST 2013
Starting 3
Thu Aug 15 16:24:38 CEST 2013

If jobs taking more than a certain amount of time are known to fail, they can be stopped with --timeout. Heads up: the accuracy of --timeout is 2 seconds:

parallel --timeout 4.1 sleep {}\; echo {} ::: 2 4 6 8

Output:

2
4

GNU parallel can compute the median runtime for jobs and kill those that take more than 200% of the median runtime:

parallel --timeout 200% sleep {}\; echo {} ::: 2.1 2.2 3 7 2.3

Output:

2.1
2.2
3
2.3

πŸ“Š Progress information

Based on the runtime of completed jobs, GNU parallel can estimate the total runtime:

parallel --eta sleep ::: 1 3 2 2 1 3 3 2 1

Output:

Computers / CPU cores / Max jobs to run
1:local / 2 / 2

Computer:jobs running/jobs completed/%of started jobs/
  Average seconds to complete
ETA: 2s 0left 1.11avg  local:0/9/100%/1.1s

Okay bestie, so you wanna watch it happen while it happens? Say less. GNU parallel can give progress information with --progress:

parallel --progress sleep ::: 1 3 2 2 1 3 3 2 1

Output:

Computers / CPU cores / Max jobs to run
1:local / 2 / 2

Computer:jobs running/jobs completed/%of started jobs/
  Average seconds to complete
local:0/9/100%/1.1s

A progress bar can be shown with --bar:

parallel --bar sleep ::: 1 3 2 2 1 3 3 2 1

And a graphic bar can be shown with --bar and zenity:

seq 1000 | parallel -j10 --bar '(echo -n {};sleep 0.1)' \
  2> >(perl -pe 'BEGIN{$/="\r";$|=1};s/\r/\n/g' |
       zenity --progress --auto-kill --auto-close)

A logfile of the jobs completed so far can be generated with --joblog:

parallel --joblog /tmp/log exit  ::: 1 2 3 0
cat /tmp/log

Output:

Seq Host Starttime      Runtime Send Receive Exitval Signal Command
1   :    1376577364.974 0.008   0    0       1       0      exit 1
2   :    1376577364.982 0.013   0    0       2       0      exit 2
3   :    1376577364.990 0.013   0    0       3       0      exit 3
4   :    1376577365.003 0.003   0    0       0       0      exit 0

The log contains the job sequence, which host the job was run on, the start time and run time, how much data was transferred, the exit value, the signal that killed the job, and finally the command being run.

With a joblog GNU parallel can be stopped and later pickup where it left off. It it important that the input of the completed jobs is unchanged.

parallel --joblog /tmp/log exit  ::: 1 2 3 0
cat /tmp/log
parallel --resume --joblog /tmp/log exit  ::: 1 2 3 0 0 0
cat /tmp/log

Output:

Seq Host Starttime      Runtime Send Receive Exitval Signal Command
1   :    1376580069.544 0.008   0    0       1       0      exit 1
2   :    1376580069.552 0.009   0    0       2       0      exit 2
3   :    1376580069.560 0.012   0    0       3       0      exit 3
4   :    1376580069.571 0.005   0    0       0       0      exit 0

Seq Host Starttime      Runtime Send Receive Exitval Signal Command
1   :    1376580069.544 0.008   0    0       1       0      exit 1
2   :    1376580069.552 0.009   0    0       2       0      exit 2
3   :    1376580069.560 0.012   0    0       3       0      exit 3
4   :    1376580069.571 0.005   0    0       0       0      exit 0
5   :    1376580070.028 0.009   0    0       0       0      exit 0
6   :    1376580070.038 0.007   0    0       0       0      exit 0

Note how the start time of the last 2 jobs is clearly different from the second run.

With --resume-failed GNU parallel will re-run the jobs that failed:

parallel --resume-failed --joblog /tmp/log exit  ::: 1 2 3 0 0 0
cat /tmp/log

Output:

Seq Host Starttime      Runtime Send Receive Exitval Signal Command
1   :    1376580069.544 0.008   0    0       1       0      exit 1
2   :    1376580069.552 0.009   0    0       2       0      exit 2
3   :    1376580069.560 0.012   0    0       3       0      exit 3
4   :    1376580069.571 0.005   0    0       0       0      exit 0
5   :    1376580070.028 0.009   0    0       0       0      exit 0
6   :    1376580070.038 0.007   0    0       0       0      exit 0
1   :    1376580154.433 0.010   0    0       1       0      exit 1
2   :    1376580154.444 0.022   0    0       2       0      exit 2
3   :    1376580154.466 0.005   0    0       3       0      exit 3

Note how seq 1 2 3 have been repeated because they had exit value different from 0.

--retry-failed does almost the same as --resume-failed. Where --resume-failed reads the commands from the command line (and ignores the commands in the joblog), --retry-failed ignores the command line and reruns the commands mentioned in the joblog.

parallel --retry-failed --joblog /tmp/log
cat /tmp/log

Output:

Seq Host Starttime      Runtime Send Receive Exitval Signal Command
1   :    1376580069.544 0.008   0    0       1       0      exit 1
2   :    1376580069.552 0.009   0    0       2       0      exit 2
3   :    1376580069.560 0.012   0    0       3       0      exit 3
4   :    1376580069.571 0.005   0    0       0       0      exit 0
5   :    1376580070.028 0.009   0    0       0       0      exit 0
6   :    1376580070.038 0.007   0    0       0       0      exit 0
1   :    1376580154.433 0.010   0    0       1       0      exit 1
2   :    1376580154.444 0.022   0    0       2       0      exit 2
3   :    1376580154.466 0.005   0    0       3       0      exit 3
1   :    1376580164.633 0.010   0    0       1       0      exit 1
2   :    1376580164.644 0.022   0    0       2       0      exit 2
3   :    1376580164.666 0.005   0    0       3       0      exit 3

πŸ›‘ Termination πŸ›‘

🧨 Unconditional termination

By default GNU parallel will wait for all jobs to finish before exiting.

If you send GNU parallel the TERM signal, GNU parallel will stop spawning new jobs and wait for the remaining jobs to finish. If you send GNU parallel the TERM signal again, GNU parallel will kill all running jobs and exit.

🎯 Termination dependent on job status

For certain jobs there is no need to continue if one of the jobs fails and has an exit code different from 0. GNU parallel will stop spawning new jobs with --halt soon,fail=1:

parallel -j2 --halt soon,fail=1 echo {}\; exit {} ::: 0 0 1 2 3

Output:

0
0
1
parallel: This job failed:
echo 1; exit 1
parallel: Starting no more jobs. Waiting for 1 jobs to finish.
2

With --halt now,fail=1 the running jobs will be killed immediately:

parallel -j2 --halt now,fail=1 echo {}\; exit {} ::: 0 0 1 2 3

Output:

0
0
1
parallel: This job failed:
echo 1; exit 1

If --halt is given a percentage this percentage of the jobs must fail before GNU parallel stops spawning more jobs:

parallel -j2 --halt soon,fail=20% echo {}\; exit {} \
  ::: 0 1 2 3 4 5 6 7 8 9

Output:

0
1
parallel: This job failed:
echo 1; exit 1
2
parallel: This job failed:
echo 2; exit 2
parallel: Starting no more jobs. Waiting for 1 jobs to finish.
3
parallel: This job failed:
echo 3; exit 3

If you are looking for success instead of failures, you can use success. This will finish as soon as the first job succeeds:

parallel -j2 --halt now,success=1 echo {}\; exit {} ::: 1 2 3 0 4 5 6

Output:

1
2
3
0
parallel: This job succeeded:
echo 0; exit 0

GNU parallel can retry the command with --retries. This is useful if a command fails for unknown reasons now and then.

parallel -k --retries 3 \
  'echo tried {} >>/tmp/runs; echo completed {}; exit {}' ::: 1 2 0
cat /tmp/runs

Output:

completed 1
completed 2
completed 0

tried 1
tried 2
tried 1
tried 2
tried 1
tried 2
tried 0

Note how job 1 and 2 were tried 3 times, but 0 was not retried because it had exit code 0.

πŸ“‘ Termination signals (advanced)

Using --termseq you can control which signals are sent when killing children. Normally children will be killed by sending them SIGTERM, waiting 200 ms, then another SIGTERM, waiting 100 ms, then another SIGTERM, waiting 50 ms, then a SIGKILL, finally waiting 25 ms before giving up. It looks like this:

show_signals() {
  perl -e 'for(keys %SIG) {
      $SIG{$_} = eval "sub { print \"Got $_\\n\"; }";
    }
    while(1){sleep 1}'
}
export -f show_signals
echo | parallel --termseq TERM,200,TERM,100,TERM,50,KILL,25 \
  -u --timeout 1 show_signals

Output:

Got TERM
Got TERM
Got TERM

Or just:

echo | parallel -u --timeout 1 show_signals

Output: Same as above.

You can change this to SIGINT, SIGTERM, SIGKILL:

echo | parallel --termseq INT,200,TERM,100,KILL,25 \
  -u --timeout 1 show_signals

Output:

Got INT
Got TERM

The SIGKILL does not show because it cannot be caught, and thus the child dies.

🌿 Limiting the resources 🌿

To avoid overloading systems GNU parallel can look at the system load before starting another job:

parallel --load 100% echo load is less than {} job per cpu ::: 1

Output:

[when then load is less than the number of cpu cores]
load is less than 1 job per cpu

GNU parallel can also check if the system is swapping.

parallel --noswap echo the system is not swapping ::: now

Output:

[when then system is not swapping]
the system is not swapping now

Some jobs need a lot of memory, and should only be started when there is enough memory free. Using --memfree GNU parallel can check if there is enough memory free. Additionally, GNU parallel will kill off the youngest job if the memory free falls below 50% of the size. The killed job will put back on the queue and retried later.

parallel --memfree 1G echo will run if more than 1 GB is ::: free

GNU parallel can run the jobs with a nice value. This will work both locally and remotely.

parallel --nice 17 echo this is being run with nice -n ::: 17

Output:

this is being run with nice -n 17

πŸ›°οΈ Remote execution πŸ›°οΈ

GNU parallel can run jobs on remote servers. It uses ssh to communicate with the remote machines.

πŸ”‘ Sshlogin πŸ”‘

The most basic sshlogin is -S host:

parallel -S $SERVER1 echo running on ::: $SERVER1

Output:

running on [$SERVER1]

To use a different username prepend the server with username@:

parallel -S username@$SERVER1 echo running on ::: username@$SERVER1

Output:

running on [username@$SERVER1]

The special sshlogin : is the local machine:

parallel -S : echo running on ::: the_local_machine

Output:

running on the_local_machine

If ssh is not in $PATH it can be prepended to $SERVER1:

parallel -S '/usr/bin/ssh '$SERVER1 echo custom ::: ssh

Output:

custom ssh

The ssh command can also be given using --ssh:

parallel --ssh /usr/bin/ssh -S $SERVER1 echo custom ::: ssh

or by setting $PARALLEL_SSH:

export PARALLEL_SSH=/usr/bin/ssh
parallel -S $SERVER1 echo custom ::: ssh

Several servers can be given using multiple -S:

parallel -S $SERVER1 -S $SERVER2 echo ::: running on more hosts

Output (the order may be different):

running
on
more
hosts

Or they can be separated by ,:

parallel -S $SERVER1,$SERVER2 echo ::: running on more hosts

Output: Same as above.

Or newline:

# This gives a \n between $SERVER1 and $SERVER2
SERVERS="`echo $SERVER1; echo $SERVER2`"
parallel -S "$SERVERS" echo ::: running on more hosts

okay so bestie, your host list can ALSO live in a file πŸ’– (just swap in the real user on $SERVER2 wherever you see user@):

echo $SERVER1 > nodefile
# Force 4 cores, special ssh-command, username
echo 4//usr/bin/ssh user@$SERVER2 >> nodefile
parallel --sshloginfile nodefile echo ::: running on more hosts

Output: Same as above.

And the iconic part? Every single time a job finishes, --sshloginfile gets re-read, so you can add AND remove hosts while things are still running. live edits, no restart, we love that for you πŸ’…

The special --sshloginfile .. reads from ~/.parallel/sshloginfile.

Wanna force GNU parallel to treat a server as having a specific number of CPU cores? Prepend the core count plus / to the sshlogin:

parallel -S 4/$SERVER1 echo force {} cpus on server ::: 4

Output:

force 4 cpus on server

Servers can also be sorted into groups by prepending @groupname to the server, and then you pick a group by appending @groupname to the argument when you're using --hostgroup:

parallel --hostgroup -S @grp1/$SERVER1 -S @grp2/$SERVER2 echo {} \
  ::: run_on_grp1@grp1 run_on_grp2@grp2

Output:

run_on_grp1
run_on_grp2

A host can be in multiple groups at once β€” just separate the group names with + β€” and you can force GNU parallel to limit which groups the command is allowed to run on with -S @groupname:

parallel -S @grp1 -S @grp1+grp2/$SERVER1 -S @grp2/SERVER2 echo {} \
  ::: run_on_grp1 also_grp1

Output:

run_on_grp1
also_grp1

πŸŽ€ Transferring files πŸŽ€

GNU parallel can ship the files you want processed over to the remote host for you, using rsync ✨

echo This is input_file > input_file
parallel -S $SERVER1 --transferfile {} cat ::: input_file

Output:

This is input_file

If the file gets processed into another file, that resulting file can come right back home to you:

echo This is input_file > input_file
parallel -S $SERVER1 --transferfile {} --return {}.out \
  cat {} ">"{}.out ::: input_file
cat input_file.out

Output: Same as above.

Wanna delete both the input and the output file over on the remote server? That's --cleanup:

echo This is input_file > input_file
parallel -S $SERVER1 --transferfile {} --return {}.out --cleanup \
  cat {} ">"{}.out ::: input_file
cat input_file.out

Output: Same as above.

There's a shorthand for --transferfile {} --return --cleanup, and it's called --trc πŸ‘‘

echo This is input_file > input_file
parallel -S $SERVER1 --trc {}.out cat {} ">"{}.out ::: input_file
cat input_file.out

Output: Same as above.

Some jobs need a shared database that every job can see. GNU parallel can move that over with --basefile, which transfers the file before the first job runs:

echo common data > common_file
parallel --basefile common_file -S $SERVER1 \
  cat common_file\; echo {} ::: foo

Output:

common data
foo

To wipe it off the remote host after the last job, use --cleanup.


πŸ“ Working dir πŸ“

The default working dir on the remote machines is the login dir, but you can switch that up with --workdir mydir.

Files transferred with --transferfile and --return are relative to mydir on remote computers, and the command itself runs in the dir mydir.

The special mydir value ... creates working dirs under ~/.parallel/tmp on the remote computers. And if you pass --cleanup, those dirs get removed. bye bye 🧹

The special mydir value . uses the current working dir. Here's the ✨vibe✨: if your current working dir sits beneath your home dir, the value . is treated as the relative path to your home dir. So even if your home dir is different on the remote computers (say, because your login is different), the relative path still ends up relative to your home dir. cute, right?

parallel -S $SERVER1 pwd ::: ""
parallel --workdir . -S $SERVER1 pwd ::: ""
parallel --workdir ... -S $SERVER1 pwd ::: ""

Output:

[the login dir on $SERVER1]
[current dir relative on $SERVER1]
[a dir in ~/.parallel/tmp/...]

🚦 Avoid overloading sshd 🚦

If you slam a ton of jobs onto the same server, sshd can get overloaded 😭 GNU parallel can put a little delay between each job run on the same server:

parallel -S $SERVER1 --sshdelay 0.2 echo ::: 1 2 3

Output (the order may be different):

1
2
3

And sshd will be way less overloaded if you use --controlmaster, which multiplexes the ssh connections ✨

parallel --controlmaster -S $SERVER1 echo ::: 1 2 3

Output: Same as above.


πŸ™ˆ Ignore hosts that are down πŸ™ˆ

In clusters with lots of hosts, a few of them are down basically always. GNU parallel can just ignore those. In this case, the host 173.194.32.46 is down:

parallel --filter-hosts -S 173.194.32.46,$SERVER1 echo ::: bar

Output:

bar

πŸ‘‘ Running the same commands on all hosts πŸ‘‘

GNU parallel can run the same command on every host you've got:

parallel --onall -S $SERVER1,$SERVER2 echo ::: foo bar

Output (the order may be different):

foo
bar
foo
bar

Usually you just want to run a single command on all hosts with no arguments at all. --nonall is basically a no-argument --onall:

parallel --nonall -S $SERVER1,$SERVER2 echo foo bar

Output:

foo bar
foo bar

When --tag is used together with --nonall and --onall, the --tagstring is the host:

parallel --nonall --tag -S $SERVER1,$SERVER2 echo foo bar

Output (the order may be different):

$SERVER1 foo bar
$SERVER2 foo bar

And --jobs sets how many servers get logged in to in parallel. multitasking queen πŸ’…


🌈 Transferring environment variables and functions 🌈

env_parallel is a shell function that carries over all your aliases, functions, variables, and arrays. Activate it like this:

source `which env_parallel.bash`

(swap bash for whatever shell you actually use, bestie)

Now you can use env_parallel instead of parallel and still keep your whole environment:

alias myecho=echo
myvar="Joe's var is"
env_parallel -S $SERVER1 'myecho $myvar' ::: green

Output:

Joe's var is green

The catch? If your environment is huge, env_parallel will fail. 😭

When env_parallel does fail, you can still use --env to tell GNU parallel to transfer a single environment variable over to the remote system:

MYVAR='foo bar'
export MYVAR
parallel --env MYVAR -S $SERVER1 echo '$MYVAR' ::: baz

Output:

foo bar baz

This works for functions too, as long as your shell is Bash:

# This only works in Bash
my_func() {
  echo in my_func $1
}
export -f my_func
parallel --env my_func -S $SERVER1 my_func ::: baz

Output:

in my_func baz

GNU parallel can copy all user defined variables and functions over to the remote system. It just needs to know which ones to ignore, and it keeps that list in ~/.parallel/ignored_vars. Set it up by running this once:

parallel --record-env
cat ~/.parallel/ignored_vars

Output:

[list of variables to ignore - including $PATH and $HOME]

Now every other variable and function you define gets copied when you use --env _:

# The function is only copied if using Bash
my_func2() {
  echo in my_func2 $VAR $1
}
export -f my_func2
VAR=foo
export VAR

parallel --env _ -S $SERVER1 'echo $VAR; my_func2' ::: bar

Output:

foo
in my_func2 foo bar

And if you're using env_parallel, the variables, functions, and aliases don't even need to be exported to get copied πŸ¦‹

NOT='not exported var'
alias myecho=echo
not_ex() {
  myecho in not_exported_func $NOT $1
}
env_parallel --env _ -S $SERVER1 'echo $NOT; not_ex' ::: bar

Output:

not exported var
in not_exported_func not exported var bar

πŸ” Showing what is actually run πŸ”

--verbose will show you the command that would be run on the local machine.

But heads up: when you're using --cat, --pipepart, or when a job runs on a remote machine, the command gets wrapped in helper scripts. -vv shows you all of that.

parallel -vv --pipepart --block 1M wc :::: num30000

Output:

<num30000 perl -e 'while(@ARGV) { sysseek(STDIN,shift,0) || die;
$left = shift; while($read = sysread(STDIN,$buf, ($left > 131072
? 131072 : $left))){ $left -= $read; syswrite(STDOUT,$buf); } }'
0 0 0 168894 | (wc)
  30000   30000  168894

Once the command gets more complex, the output is honestly so hard to read that it's only useful for debugging πŸ’€

my_func3() {
  echo in my_func $1 > $1.out
}
export -f my_func3
parallel -vv --workdir ... --nice 17 --env _ --trc {}.out \
  -S $SERVER1 my_func3 {} ::: abc-file

Output will be similar to:

( ssh server -- mkdir -p ./.parallel/tmp/aspire-1928520-1;rsync
--protocol 30 -rlDzR -essh ./abc-file
server:./.parallel/tmp/aspire-1928520-1 );ssh server -- exec perl -e
\''@GNU_Parallel=("use","IPC::Open3;","use","MIME::Base64");
eval"@GNU_Parallel";my$eval=decode_base64(join"",@ARGV);eval$eval;'\'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=;
_EXIT_status=$?; mkdir -p ./.; rsync --protocol 30 --rsync-path=cd\
./.parallel/tmp/aspire-1928520-1/./.\;\ rsync -rlDzR -essh
server:./abc-file.out ./.;ssh server -- \(rm\ -f\
./.parallel/tmp/aspire-1928520-1/abc-file\;\ sh\ -c\ \'rmdir\
./.parallel/tmp/aspire-1928520-1/\ ./.parallel/tmp/\ ./.parallel/\
2\>/dev/null\'\;rm\ -rf\ ./.parallel/tmp/aspire-1928520-1\;\);ssh
server -- \(rm\ -f\ ./.parallel/tmp/aspire-1928520-1/abc-file.out\;\
sh\ -c\ \'rmdir\ ./.parallel/tmp/aspire-1928520-1/\ ./.parallel/tmp/\
./.parallel/\ 2\>/dev/null\'\;rm\ -rf\
./.parallel/tmp/aspire-1928520-1\;\);ssh server -- rm -rf
.parallel/tmp/aspire-1928520-1; exit $_EXIT_status;

✨ Saving output to shell variables (advanced) ✨

Okay bestie, meet GNU parset πŸ’– β€” it sets shell variables to the output of GNU parallel. Iconic, right? But it has one big limitation, and I need you to hear me on this: it cannot be part of a pipe. Which means it can't read anything from standard input (stdin) and it can't pipe output to another program. No pipe. Not even a little one. 🚫

To use GNU parset you prepend the command with the destination variables, like so:

parset myvar1,myvar2 echo ::: a b
echo $myvar1
echo $myvar2

Output:

a
b

If you only give it a single variable, it gets treated as an array instead. Slay πŸŽ€

parset myarray seq {} 5 ::: 1 2 3
echo "${myarray[1]}"

Output:

2
3
4
5

And the commands you want to run? They can totally be an array too πŸ’…

cmd=("echo '<<joe  \"double  space\"  cartoon>>'" "pwd")
parset data ::: "${cmd[@]}"
echo "${data[0]}"
echo "${data[1]}"

Output:

<<joe  "double  space"  cartoon>>
[current dir]

🌈 Saving to an SQL base (advanced) 🌈

GNU parallel can save into an SQL base, fr fr. You point GNU parallel at a table, and it drops the joblog in there β€” together with the variables and the output, each in their own little column. Organized queen energy πŸ‘‘

πŸ“ CSV as SQL base

The simplest move is using a CSV file as your storage table:

parallel --sqlandworker csv:///%2Ftmp/log.csv \
  seq ::: 10 ::: 12 13 14
cat /tmp/log.csv

Note how the / in the path must be written as %2F. That's not a vibe, that's a rule 😭

Output will be similar to:

Seq,Host,Starttime,JobRuntime,Send,Receive,Exitval,_Signal,
  Command,V1,V2,Stdout,Stderr
1,:,1458254498.254,0.069,0,9,0,0,"seq 10 12",10,12,"10
11
12
",
2,:,1458254498.278,0.080,0,12,0,0,"seq 10 13",10,13,"10
11
12
13
",
3,:,1458254498.301,0.083,0,15,0,0,"seq 10 14",10,14,"10
11
12
13
14
",

A proper CSV reader (think LibreOffice, or R's read.csv) will read this format correctly β€” even with fields containing newlines like the ones above. Look at that, fields with whole newlines in them and it still eats. Ate and left no crumbs 🍽️✨

If your output is big you may want to put it into files using --results:

parallel --results outdir --sqlandworker csv:///%2Ftmp/log2.csv \
  seq ::: 10 ::: 12 13 14
cat /tmp/log2.csv

Output will be similar to:

Seq,Host,Starttime,JobRuntime,Send,Receive,Exitval,_Signal,
  Command,V1,V2,Stdout,Stderr
1,:,1458824738.287,0.029,0,9,0,0,
  "seq 10 12",10,12,outdir/1/10/2/12/stdout,outdir/1/10/2/12/stderr
2,:,1458824738.298,0.025,0,12,0,0,
  "seq 10 13",10,13,outdir/1/10/2/13/stdout,outdir/1/10/2/13/stderr
3,:,1458824738.309,0.026,0,15,0,0,
  "seq 10 14",10,14,outdir/1/10/2/14/stdout,outdir/1/10/2/14/stderr

πŸ¦‹ DBURL as table

That CSV file? It's an example of a DBURL. Casual flex πŸ’…

GNU parallel uses a DBURL to address the table. A DBURL has this format:

vendor://[[user][:password]@][host][:port]/[database[/table]

Example:

mysql://scott:tiger@my.example.com/mydatabase/mytable
postgresql://scott:tiger@pg.example.com/mydatabase/mytable
sqlite3:///%2Ftmp%2Fmydatabase/mytable
csv:///%2Ftmp/log.csv

To refer to /tmp/mydatabase with sqlite or csv you need to encode the / as %2F. Same rule as before, she's consistent πŸ‘‘

Run a job using sqlite on mytable in /tmp/mydatabase:

DBURL=sqlite3:///%2Ftmp%2Fmydatabase
DBURLTABLE=$DBURL/mytable
parallel --sqlandworker $DBURLTABLE echo ::: foo bar ::: baz quuz

To see the result:

sql $DBURL 'SELECT * FROM mytable ORDER BY Seq;'

Output will be similar to:

Seq|Host|Starttime|JobRuntime|Send|Receive|Exitval|_Signal|
  Command|V1|V2|Stdout|Stderr
1|:|1451619638.903|0.806||8|0|0|echo foo baz|foo|baz|foo baz
|
2|:|1451619639.265|1.54||9|0|0|echo foo quuz|foo|quuz|foo quuz
|
3|:|1451619640.378|1.43||8|0|0|echo bar baz|bar|baz|bar baz
|
4|:|1451619641.473|0.958||9|0|0|echo bar quuz|bar|quuz|bar quuz
|

The first columns are well known from --joblog. V1 and V2 are data from the input sources. And Stdout and Stderr are standard output and standard error, respectively. Iykyk 😌

🌸 Using multiple workers

Using an SQL base as storage costs overhead in the order of 1 second per job. One whole second, every job. Not me paying that tax for no reason 😭

One of the situations where it makes sense is if you have multiple workers.

You can then have a single master machine that submits jobs to the SQL base β€” but does not do any of the work:

parallel --sqlmaster $DBURLTABLE echo ::: foo bar ::: baz quuz

On the worker machines you run exactly the same command except you replace --sqlmaster with --sqlworker.

parallel --sqlworker $DBURLTABLE echo ::: foo bar ::: baz quuz

And if you wanna run a master and a worker on the same machine? Use --sqlandworker like we showed earlier. Main character setup tbh πŸ‘‘βœ¨

🚰 --pipe β€” the whole vibe shift

Okay bestie, this one's a mode change. --pipe flips GNU parallel into a completely different era. Instead of taking the data on stdin (standard input) and treating it as arguments for a command to run, it straight-up sends the data to stdin (standard input) of the command. Different energy entirely. πŸ’…

The classic scenario is:

command_A | command_B | command_C

where command_B is slow 😭 and you just want to speed up command_B. That's it. That's the assignment.


Chunk size βœ‚οΈ

By default GNU parallel will start an instance of command_B, read a chunk of 1 MB, and pass that to the instance. Then it starts another instance, reads another chunk, passes it to the second instance. Lather, rinse, parallelize. 🫢

cat num1000000 | parallel --pipe wc

Output (the order may be different):

165668  165668 1048571
149797  149797 1048579
149796  149796 1048572
149797  149797 1048579
149797  149797 1048579
149796  149796 1048572
 85349   85349  597444

Now, the size of the chunk is not exactly 1 MB β€” and that's not a bug, bestie, that's a choice. GNU parallel only passes full lines, never half a line, so the blocksize is only 1 MB on average. It's giving ✨boundary respect✨. You can change the block size to 2 MB with --block:

cat num1000000 | parallel --pipe --block 2M wc

Output (the order may be different):

315465  315465 2097150
299593  299593 2097151
299593  299593 2097151
 85349   85349  597444

GNU parallel treats each line as a record. So if the order of records is unimportant (like, you need all lines processed, but you genuinely do not care which is processed first β€” very demure, very unbothered), then you can use --roundrobin. 🌈

Here's the difference: without --roundrobin GNU parallel will start a command per block; with --roundrobin only the requested number of jobs will be started (--jobs). Then the records get distributed between the running jobs. Sharing is caring.

cat num1000000 | parallel --pipe -j4 --roundrobin wc

Output will be similar to:

149797  149797 1048579
299593  299593 2097151
315465  315465 2097150
235145  235145 1646016

So real talk: one of the 4 instances got a single record, 2 instances got 2 full records each, and one instance got 1 full and 1 partial record. Uneven? Yes. Iconic? Also yes. πŸ’€


Records πŸ“

GNU parallel sees the input as records. The default record is a single line.

Using -N140000 GNU parallel will read 140000 records at a time:

cat num1000000 | parallel --pipe -N140000 wc

Output (the order may be different):

140000  140000  868895
140000  140000  980000
140000  140000  980000
140000  140000  980000
140000  140000  980000
140000  140000  980000
140000  140000  980000
 20000   20000  140001

Note how the last job could not get the full 140000 lines, but only 20000 lines. The leftovers said "I'm the main character now". 😀

If a record is 75 lines, -L can be used:

cat num1000000 | parallel --pipe -L75 wc

Output (the order may be different):

165600  165600 1048095
149850  149850 1048950
149775  149775 1048425
149775  149775 1048425
149850  149850 1048950
149775  149775 1048425
 85350   85350  597450
    25      25     176

Note how GNU parallel still reads a block of around 1 MB; but instead of passing full lines to wc it passes full 75 lines at a time. This of course does not hold for the last job (which in this case got 25 lines). Poor little guy. πŸ₯Ί


Fixed length records πŸ“

Fixed length records can be processed by setting --recend '' and --block recordsize. A header of size n can be processed with --header .{n}.

Here is how to process a file with a 4-byte header and a 3-byte record size:

cat fixedlen | parallel --pipe --header .{4} --block 3 --recend '' \
  'echo start; cat; echo'

Output:

start
HHHHAAA
start
HHHHCCC
start
HHHHBBB

It may be more efficient to increase --block to a multiplum of the record size. (Yes, "multiplum". We don't gatekeep vocabulary here. πŸ‘‘)


Record separators πŸ”ͺ

GNU parallel uses separators to determine where two records split.

--recstart gives the string that starts a record; --recend gives the string that ends a record. The default is --recend '\n' (newline, the OG).

If both --recend and --recstart are given, then the record will only split if the recend string is immediately followed by the recstart string. Both conditions, no shortcuts. πŸ’–

Here the --recend is set to ', ':

echo /foo, bar/, /baz, qux/, | \
  parallel -kN1 --recend ', ' --pipe echo JOB{#}\;cat\;echo END

Output:

JOB1
/foo, END
JOB2
bar/, END
JOB3
/baz, END
JOB4
qux/,
END

Here the --recstart is set to /:

echo /foo, bar/, /baz, qux/, | \
  parallel -kN1 --recstart / --pipe echo JOB{#}\;cat\;echo END

Output:

JOB1
/foo, barEND
JOB2
/, END
JOB3
/baz, quxEND
JOB4
/,
END

Here both --recend and --recstart are set:

echo /foo, bar/, /baz, qux/, | \
  parallel -kN1 --recend ', ' --recstart / --pipe \
  echo JOB{#}\;cat\;echo END

Output:

JOB1
/foo, bar/, END
JOB2
/baz, qux/,
END

Note the difference between setting one string and setting both strings. It's giving nuance. πŸ¦‹

With --regexp the --recend and --recstart will be treated as a regular expression:

echo foo,bar,_baz,__qux, | \
  parallel -kN1 --regexp --recend ,_+ --pipe \
  echo JOB{#}\;cat\;echo END

Output:

JOB1
foo,bar,_END
JOB2
baz,__END
JOB3
qux,
END

GNU parallel can remove the record separators with --remove-rec-sep / --rrs:

echo foo,bar,_baz,__qux, | \
  parallel -kN1 --rrs --regexp --recend ,_+ --pipe \
  echo JOB{#}\;cat\;echo END

Output:

JOB1
foo,barEND
JOB2
bazEND
JOB3
qux,
END

If the input data has a header, the header can be repeated for each job by matching the header with --header. If headers start with % you can do this:

cat num_%header | \
  parallel --header '(%.*\n)*' --pipe -N3 echo JOB{#}\;cat

Output (the order may be different):

JOB1
%head1
%head2
1
2
3
JOB2
%head1
%head2
4
5
6
JOB3
%head1
%head2
7
8
9
JOB4
%head1
%head2
10

Every single job gets the header. Nobody gets left out. We love inclusivity. 🫢

If the header is 2 lines, --header 2 will work:

cat num_%header | parallel --header 2 --pipe -N3 echo JOB{#}\;cat

Output: Same as above. ✨


--pipepart ⚑

Okay so --pipe is not very efficient, ngl. It maxes out at around 500 MB/s. --pipepart can easily deliver 5 GB/s. The glow-up is real. πŸ”₯

But β€” and I need you to hear me β€” there are a few limitations:

  • The input has to be a normal file (not a pipe) given by -a or ::::
  • -L / -l / -N do not work

--recend and --recstart, however, do work, and records can often be split on that alone.

parallel --pipepart -a num1000000 --block 3m wc

Output (the order may be different):

444443  444444 3000002
428572  428572 3000004
126985  126984  888890

Shebang 🌈

Input data and parallel command in the same file

GNU parallel is often called as this:

cat input_file | parallel command

With --shebang the input_file and parallel can be combined into the same script. Two things, one file, bestie behavior. πŸ’–

UNIX shell scripts start with a shebang line like this:

#!/bin/bash

GNU parallel can do that, too. With --shebang the arguments can be listed in the file. The parallel command is the first line of the script:

#!/usr/bin/parallel --shebang -r echo

foo
bar
baz

Output (the order may be different):

foo
bar
baz

Parallelizing existing scripts 🧚

GNU parallel is often called as this:

cat input_file | parallel command
parallel command ::: foo bar

If command is a script, parallel can be combined into a single file so this will run the script in parallel:

cat input_file | command
command foo bar

This perl script perl_echo works like echo:

#!/usr/bin/perl

print "@ARGV\n"

It can be called as this:

parallel perl_echo ::: foo bar

By changing the #!-line it can be run in parallel:

#!/usr/bin/parallel --shebang-wrap /usr/bin/perl

print "@ARGV\n"

Thus this will work:

perl_echo foo bar

Output (the order may be different):

foo
bar

This technique can be used for: πŸ‘‡

Perl:

#!/usr/bin/parallel --shebang-wrap /usr/bin/perl

print "Arguments @ARGV\n";

Python:

#!/usr/bin/parallel --shebang-wrap /usr/bin/python

import sys
print 'Arguments', str(sys.argv)

Bash/sh/zsh/Korn shell:

#!/usr/bin/parallel --shebang-wrap /bin/bash

echo Arguments "$@"

csh:

#!/usr/bin/parallel --shebang-wrap /bin/csh

echo Arguments "$argv"

Tcl:

#!/usr/bin/parallel --shebang-wrap /usr/bin/tclsh

puts "Arguments $argv"

R:

#!/usr/bin/parallel --shebang-wrap /usr/bin/Rscript --vanilla --slave

args <- commandArgs(trailingOnly = TRUE)
print(paste("Arguments ",args))

GNUplot:

#!/usr/bin/parallel --shebang-wrap ARG={} /usr/bin/gnuplot

print "Arguments ", system('echo $ARG')

Ruby:

#!/usr/bin/parallel --shebang-wrap /usr/bin/ruby

print "Arguments "
puts ARGV

Octave:

#!/usr/bin/parallel --shebang-wrap /usr/bin/octave

printf ("Arguments");
arg_list = argv ();
for i = 1:nargin
  printf (" %s", arg_list{i});
endfor
printf ("\n");

Common LISP:

#!/usr/bin/parallel --shebang-wrap /usr/bin/clisp

(format t "~&~S~&" 'Arguments)
(format t "~&~S~&" *args*)

PHP:

#!/usr/bin/parallel --shebang-wrap /usr/bin/php
<?php
echo "Arguments";
foreach(array_slice($argv,1) as $v)
{
  echo " $v";
}
echo "\n";
?>

Node.js:

#!/usr/bin/parallel --shebang-wrap /usr/bin/node

var myArgs = process.argv.slice(2);
console.log('Arguments ', myArgs);

LUA:

#!/usr/bin/parallel --shebang-wrap /usr/bin/lua

io.write "Arguments"
for a = 1, #arg do
  io.write(" ")
  io.write(arg[a])
end
print("")

C#:

#!/usr/bin/parallel --shebang-wrap ARGV={} /usr/bin/csharp

var argv = Environment.GetEnvironmentVariable("ARGV");
print("Arguments "+argv);

Every language eating, no crumbs. 🌟

πŸ’– Semaphore πŸ’–

okay bestie, so GNU parallel can literally work as a counting semaphore. This is slower and less efficient than its normal mode, but it's a vibe when you need it. ✨

A counting semaphore is like a row of toilets. 🚽 People needing a toilet can use any toilet, but if there are more people than toilets, they will have to wait for one of the toilets to become available. periodt.

An alias for parallel --semaphore is sem.

sem will follow a person to the toilets, wait until a toilet is available, leave the person in the toilet and exit.

sem --fg will follow a person to the toilets, wait until a toilet is available, stay with the person in the toilet and exit when the person exits.

sem --wait will wait for all persons to leave the toilets.

sem does not have a queue discipline, so the next person is chosen randomly. 🎲

-j sets the number of toilets.


Mutex πŸ”’

The default is to have only one toilet (this is called a mutex). The program is started in the background and sem exits immediately. Use --wait to wait for all sems to finish:

sem 'sleep 1; echo The first finished' &&
  echo The first is now running in the background &&
  sem 'sleep 1; echo The second finished' &&
  echo The second is now running in the background
sem --wait

Output:

The first is now running in the background
The first finished
The second is now running in the background
The second finished

The command can be run in the foreground with --fg, which will only exit when the command completes:

sem --fg 'sleep 1; echo The first finished' &&
  echo The first finished running in the foreground &&
  sem --fg 'sleep 1; echo The second finished' &&
  echo The second finished running in the foreground
sem --wait

The difference between this and just running the command, is that a mutex is set, so if other sems were running in the background only one would run at a time.

To control which semaphore is used, use --semaphorename/--id. Run this in one terminal:

sem --id my_id -u 'echo First started; sleep 10; echo First done'

and simultaneously this in another terminal:

sem --id my_id -u 'echo Second started; sleep 10; echo Second done'

Note how the second will only be started when the first has finished.


Counting semaphore 🚽🚽🚽

A mutex is like having a single toilet: When it is in use everyone else will have to wait. A counting semaphore is like having multiple toilets: Several people can use the toilets, but when they all are in use, everyone else will have to wait.

sem can emulate a counting semaphore. Use --jobs to set the number of toilets like this:

sem --jobs 3 --id my_id -u 'echo Start 1; sleep 5; echo 1 done' &&
sem --jobs 3 --id my_id -u 'echo Start 2; sleep 6; echo 2 done' &&
sem --jobs 3 --id my_id -u 'echo Start 3; sleep 7; echo 3 done' &&
sem --jobs 3 --id my_id -u 'echo Start 4; sleep 8; echo 4 done' &&
sem --wait --id my_id

Output:

Start 1
Start 2
Start 3
1 done
Start 4
2 done
3 done
4 done

Timeout ⏰

With --semaphoretimeout you can force running the command anyway after a period (positive number) or give up (negative number):

sem --id foo -u 'echo Slow started; sleep 5; echo Slow ended' &&
sem --id foo --semaphoretimeout 1 'echo Forced running after 1 sec' &&
sem --id foo --semaphoretimeout -2 'echo Give up after 2 secs'
sem --id foo --wait

Output:

Slow started
parallel: Warning: Semaphore timed out. Stealing the semaphore.
Forced running after 1 sec
parallel: Warning: Semaphore timed out. Exiting.
Slow ended

Note how the 'Give up' was not run.


✨ Informational ✨

GNU parallel has some options to give short information about the configuration.

--help will print a summary of the most important options:

parallel --help

Output:

Usage:

parallel [options] [command [arguments]] < list_of_arguments
parallel [options] [command [arguments]] (::: arguments|:::: argfile(s))...
cat ... | parallel --pipe [options] [command [arguments]]

-j n            Run n jobs in parallel
-k              Keep same order
-X              Multiple arguments with context replace
--colsep regexp Split input on regexp for positional replacements
{} {.} {/} {/.} {#} {%} {= perl code =} Replacement strings
{3} {3.} {3/} {3/.} {=3 perl code =}    Positional replacement strings
With --plus:    {} = {+/}/{/} = {.}.{+.} = {+/}/{/.}.{+.} = {..}.{+..} =
                {+/}/{/..}.{+..} = {...}.{+...} = {+/}/{/...}.{+...}

-S sshlogin     Example: foo@server.example.com
--slf ..        Use ~/.parallel/sshloginfile as the list of sshlogins
--trc {}.bar    Shorthand for --transfer --return {}.bar --cleanup
--onall         Run the given command with argument on all sshlogins
--nonall        Run the given command with no arguments on all sshlogins

--pipe          Split stdin (standard input) to multiple jobs.
--recend str    Record end separator for --pipe.
--recstart str  Record start separator for --pipe.

See 'man parallel' for details

Academic tradition requires you to cite works you base your article on.
When using programs that use GNU Parallel to process data for publication
please cite:

  O. Tange (2011): GNU Parallel - The Command-Line Power Tool,
  ;login: The USENIX Magazine, February 2011:42-47.

This helps funding further development; AND IT WON'T COST YOU A CENT.
If you pay 10000 EUR you should feel free to use GNU Parallel without citing.

When asking for help, always report the full output of this:

parallel --version

Output:

GNU parallel 20230122
Copyright (C) 2007-2026 Ole Tange, http://ole.tange.dk and Free Software
Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <https://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
GNU parallel comes with no warranty.

Web site: https://www.gnu.org/software/parallel

When using programs that use GNU Parallel to process data for publication
please cite as described in 'parallel --citation'.

In scripts --minversion can be used to ensure the user has at least this version:

parallel --minversion 20130722 && \
  echo Your version is at least 20130722.

Output:

20160322
Your version is at least 20130722.

If you are using GNU parallel for research the BibTeX citation can be generated using --citation:

parallel --citation

Output:

Academic tradition requires you to cite works you base your article on.
When using programs that use GNU Parallel to process data for publication
please cite:

@article{Tange2011a,
  title = {GNU Parallel - The Command-Line Power Tool},
  author = {O. Tange},
  address = {Frederiksberg, Denmark},
  journal = {;login: The USENIX Magazine},
  month = {Feb},
  number = {1},
  volume = {36},
  url = {https://www.gnu.org/s/parallel},
  year = {2011},
  pages = {42-47},
  doi = {10.5281/zenodo.16303}
}

(Feel free to use \nocite{Tange2011a})

This helps funding further development; AND IT WON'T COST YOU A CENT.
If you pay 10000 EUR you should feel free to use GNU Parallel without citing.

If you send a copy of your published article to tange@gnu.org, it will be
mentioned in the release notes of next version of GNU Parallel.

With --max-line-length-allowed GNU parallel will report the maximal size of the command line:

parallel --max-line-length-allowed

Output (may vary on different systems):

131071

--number-of-cpus and --number-of-cores run system specific code to determine the number of CPUs and CPU cores on the system. On unsupported platforms they will return 1:

parallel --number-of-cpus
parallel --number-of-cores

Output (may vary on different systems):

4
64

🌸 Profiles 🌸

The defaults for GNU parallel can be changed systemwide by putting the command line options in /etc/parallel/config. They can be changed for a user by putting them in ~/.parallel/config.

Profiles work the same way, but have to be referred to with --profile:

echo '--nice 17' > ~/.parallel/nicetimeout
echo '--timeout 300%' >> ~/.parallel/nicetimeout
parallel --profile nicetimeout echo ::: A B C

Output:

A
B
C

Profiles can be combined:

echo '-vv --dry-run' > ~/.parallel/dryverbose
parallel --profile dryverbose --profile nicetimeout echo ::: A B C

Output:

echo A
echo B
echo C

πŸ¦‹ Spread the word πŸ¦‹

I hope you have learned something from this tutorial. πŸ’œ

If you like GNU parallel:

  • (Re-)walk through the tutorial if you have not done so in the past year (https://www.gnu.org/software/parallel/parallel_tutorial.html)
  • Give a demo at your local user group/your team/your colleagues
  • Post the intro videos and the tutorial on Reddit, Mastodon, Diaspora*, forums, blogs, Identi.ca, Google+, Twitter, Facebook, Linkedin, and mailing lists
  • Request or write a review for your favourite blog or magazine (especially if you do something cool with GNU parallel)
  • Invite me for your next conference

If you use GNU parallel for research:

  • Please cite GNU parallel in you publications (use --citation)

If GNU parallel saves you money:

(C) 2013-2026 Ole Tange, GFDLv1.3+ (See LICENSES/GFDL-1.3-or-later.txt)


And that's the whole tutorial, bestie! 🌈 This page is from GNU parallel version 20260122, dated 2026-01-31, and it's PARALLEL_TUTORIAL(7). Go slay some parallel jobs! πŸ’…βœ¨

πŸ“¦ where this page comes from