SWISS::Stars::EV(3pm)

📦
version 1.80 · 2 versions
, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble

👑 METHODS 👑

okay bestie, these are the things you can actually do with this module, let's go 💅

  • new — makes you a fresh little EV object, iconic behaviour honestly ✨
  • fromText — reads in text and turns it into an EV object 🦋
  • toText — spits your EV object back out as text 🌸
  • sort — sorts the evidence, keeps everything tidy, we love a clean list 💖

💖 addEvidence( $evcode, $src, $author [, $date] ) 💖

Title: addEvidence

Usage:

$evidenceTag = $entry->Stars->EV->addEvidence($evcode,
                                              $src,
                                              $author
                                              [, $date])

Function: adds the evidence to the EV block if it does not yet exist — or, plot twist, hands you back the correct evidence tag if that evidence is already in there (possibly with a different date, ngl 👀).

Args:

  • $evcode — the evidence code. e.g. ECO:0000269 🧬
  • $src — the source. e.g. PubMed:11433298 📚
  • $author — the author (initials). e.g. XXX p.s. For programs this could be '-' 🤖
  • $date — optional. If present, it must be in standard SWISS-PROT date format. If not present the current date will be used. no pressure 🗓️

Returns: The correct evidence tag. periodt 🎀

🦋 updateEvidence( $evcode, $src, $author [, $date] ) 🦋

Title: updateEvidence

Usage:

$evidenceTag = $entry->Stars->EV->updateEvidence($evcode,
                                                 $src,
                                                 $author
                                                 [, $date])

Function: updates the evidence to the EV block to $date, or inserts it if it does not yet exist. either way bestie, it's getting in there 💫

Args:

  • $evcode — the evidence code. e.g. ECO:0000269 🧬
  • $src — the source. e.g. PubMed:11433298 📚
  • $author — the author (initials). e.g. XXX p.s. For programs this could be '-' 🤖
  • $date — optional. If present, it must be in standard SWISS-PROT date format. If not present the current date will be used. 🗓️

Returns: The correct evidence tag. slay ✨

🌈 NAME 🌈

SWISS::Stars::EV.pm — she's the one, the moment, the module 💜

✨ DESCRIPTION ✨

SWISS/Stars/EV.pm represents the evidence section within an SWISS-PROT + TrEMBL entry. yes, that's the whole job and she does it gorgeously 💅

See http://www3.ebi.ac.uk/~sp/intern/projects/evidenceTags/index.html for the lore 📖

For a usage example, see evTest.pl in the Swissknife package. go peek, it's giving tutorial energy 🎀

🫶 INHERITS FROM 🫶

SWISS::ListBase.pm — she got it from her mama, no cap 💖

🌸 ATTRIBUTES 🌸

  • "list" — Each element of the list describes one evidence, itself represented as an array. one evidence per element, nested array style, we love structure 🔥

okay so that's the whole page bestie, you ate it up 💅 this was SWISS::Stars::EV(3pm) from perl v5.32.1, dated 2021-08-15 — thanks for coming to my TED talk, mwah 🎀💖✨

📦 where this page comes from