Bio::Tradis(3pm)

📦
version 1.4.5 · 3 versions
, in debian bookworm, ubuntu jammy

✨ NAME ✨

okay so bestie, welcome to Bio::Tradis 💖 — it's a whole toolkit for analysing the output from TraDIS runs. It's giving "bioinformatics but make it cute". And if you wanna know what the TraDIS method actually is, the paper is right here: http://genome.cshlp.org/content/19/12/2308 — go read it, it's iconic 🧬✨

🌸 VERSION 🌸

This is version 1.4.5 — yes, we're keeping receipts 📌

🎀 SYNOPSIS 🎀

So here's the tea ☕ — Bio-Tradis gives you the functionality to do all of this:

  • detect TraDIS tags in a BAM file — Bio::Tradis::DetectTags 🔍
  • add the tags to the reads — Bio::Tradis::AddTagsToSeq 🏷️
  • filter reads in a FastQ file containing a user defined tag — Bio::Tradis::FilterTags 🧹
  • remove tags — Bio::Tradis::RemoveTags ✂️
  • map to a reference genome — Bio::Tradis::Map 🗺️
  • create an insertion site plot file — Bio::Tradis::TradisPlot 📈

And the best part?? Most of these functions are available as standalone scripts or as perl modules. So you can run them your way, no cap 🫶

💜 AUTHOR 💜

Carla Cummins <path-help@sanger.ac.uk> — shoutout to the queen 👑

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007
fr fr it's genuinely free software, so use it, share it, love it — just respect the GPLv3 terms, periodt 💅

okay that's the whole page bestie, mwah 💖✨

This lil doc was rendered by perl v5.30.0 on 2020-01-11, and the page itself is Bio::Tradis(3pm) — catch you in the next manpage, love u, bye 🦋🌸

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