Bio::SeqIO::tigr(3pm)

πŸ“¦
version 1.7.8 Β· 3 versions
, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble

✨ Bio::SeqIO::tigr ✨

aka the TIGR XML sequence input/output stream, bestie πŸ’–

You're looking at the manual page for Bio::SeqIO::tigr, a Perl module, filed under User Contributed Perl Documentation. Yeah. We're in the deep lore now. 🧚


🌸 NAME 🌸

Bio::SeqIO::tigr β€” TIGR XML sequence input/output stream. That's it. That's the whole name. Short, sweet, iconic. πŸ’…


✨ SYNOPSIS ✨

Okay so listen. Do not use this module directly. Like, at all. I'm so serious. πŸ™ˆ

Do not use this module directly.  Use it via the Bio::SeqIO class.

You go through Bio::SeqIO, bestie. That's the move. The way that Bio::SeqIO handles all the heavy lifting and you just vibe? Obsessed. πŸ‘‘


πŸ¦‹ DESCRIPTION πŸ¦‹

This object can transform Bio::Seq objects to and from efa flat file databases. No cap. That's its whole job and it does it beautifully. 🌈


πŸ’Œ FEEDBACK πŸ’Œ

πŸ“¬ Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules, fr fr. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated. Like genuinely, we eat it up. 🫢

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

πŸ†˜ Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

...rather than to the module maintainer directly. Lowkey important!! Many experienced and responsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible β€” the more deets the better, bestie. πŸ“

πŸ› Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

Go off. Tell us everything. We're listening. πŸ‘€


πŸ‘‘ AUTHORS - Josh Lauricha πŸ‘‘

Email: laurichj@bioinfo.ucr.edu

Shoutout Josh. Main character energy, honestly. πŸ’œ


πŸ“– APPENDIX πŸ“–

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ β€” that's your lil signal that it's an inside job, iykyk. 🀫

🌟 next_seq

Title   : next_seq
Usage   : $seq = $stream->next_seq()
Function: returns the next sequence in the stream
Returns : Bio::Seq object
Args    : NONE

Args is NONE. It takes nothing. It simply gives. Queen behavior. πŸŽ€


And that's the whole page!! This was perl v5.32.1, dated 2021-08-15, from Bio::SeqIO::tigr(3pm). Slay, go read your sequences, mwah πŸ’‹βœ¨

πŸ“¦ where this page comes from