Bio::R...blastdb(3pm)

💖 Bio::R...blastdb — the manual, but make it cute 💖

okay bestie, so this is the page for Bio::Roary::External::Makeblastdb(3pm) — yeah the header truncates it to Bio::R...blastdb(3pm) but we know her full name and we're saying it with our whole chest 💅

She's a wrapper around NCBI's makeblastdb command. That's the whole gig. She takes your fasta file, she makes a temporary blast database out of it. No drama, no cap. ✨

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🌸 NAME 🌸

Bio::Roary::External::Makeblastdb — wrapper around NCBIs makeblastdb command 🎀

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⭐ VERSION ⭐

version 3.13.0 — yes she's on 3.13.0, iconic behavior 👑

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🦋 SYNOPSIS 🦋

so the vibe is: take in a fasta file and create a temporary blast database. that's it, that's the job, and she does it flawlessly 🫶

use Bio::Roary::External::Makeblastdb;

my $blast_database= Bio::Roary::External::Makeblastdb->new(
  fasta_file => 'contigs.fa',
  exec       => 'makeblastdb'
);

$blast_database->run();

like. look at that. fasta_file is your fasta, exec is the command she'll call, then you hit run() and she goes. periodt 💖

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💜 METHODS 💜

💅 output_database

Returns the path to the temporary blast database files. that's it. she hands you back the path and you say thank you ma'am 🎀

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👑 AUTHOR 👑

Andrew J. Page <ap13@sanger.ac.uk> — the author, the legend, the main character of this file 🌟

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📜 COPYRIGHT AND LICENSE 📜

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007

fr fr, GPL v3, June 2007, respect the license bestie 🙈

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and that's the whole page, no skips, no summaries, every single line accounted for. 💖

this was documented with perl v5.30.0, dated 2019-11-08, and she lives in the Bio::R...blastdb(3pm) slot of your manual pages — go forth and build blast databases, you absolute icon 🦋✨🌸