Bio::G...ce_site(3pm)

📦
version 2.40 · 2 versions
, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble

🎀 NAME 🎀

Bio::Graphics::Glyph::splice_site — bestie, this is the "splice_site" glyph 💅 (yes that's the whole name, it lives in the Bio::Graphics::Glyph family, and it's a User Contributed Perl Documentation page, iykyk)

✨ SYNOPSIS ✨

okay so like, the whole vibe check here is just:

See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.

that's it. that's the synopsis. go read those two, they're the main characters 🫶

💖 DESCRIPTION 💖

so this glyph was designed to show an inverted "L" shape — and that L is doing splice donors and acceptors energy 🌸

the vertical part of the L points downwards ⬇️ and it's positioned in the center of the range — and no, it does not care how big the range is. even if the range is quite large, it stays centered. slay.

🦋 the extra options 🦋

in addition to the usual glyph options (those live elsewhere bestie, not my problem), this glyph recognizes these two:

  • direction — takes a value of "left" or "right", and it controls which way the short part of the L points. pick a side, it's giving directional 💅
  • height_fraction — takes a value from 0.0 to 1.0, and it's the fractional height of the glyph. usually it's a callback that uses the feature's score to determine its height. so like, the score decides how tall your little L gets. obsessed 😌
ngl the original lays this out as a table with columns Option, Value, Description — I kept every single value and every single word of those descriptions, just made it cute instead. no cap, nothing got dropped 🫶

💀 BUGS 💀

Please report them. (yes, that's literally all it says — so if you find one, report it, don't just suffer in silence bestie 😭)

🌈 SEE ALSO 🌈

the whole friend group, fr fr — go say hi to all of them:

  • Bio::Graphics::Panel
  • Bio::Graphics::Glyph
  • Bio::Graphics::Glyph::arrow
  • Bio::Graphics::Glyph::cds
  • Bio::Graphics::Glyph::crossbox
  • Bio::Graphics::Glyph::diamond
  • Bio::Graphics::Glyph::dna
  • Bio::Graphics::Glyph::dot
  • Bio::Graphics::Glyph::ellipse
  • Bio::Graphics::Glyph::extending_arrow
  • Bio::Graphics::Glyph::generic
  • Bio::Graphics::Glyph::graded_segments
  • Bio::Graphics::Glyph::heterogeneous_segments
  • Bio::Graphics::Glyph::line
  • Bio::Graphics::Glyph::pinsertion
  • Bio::Graphics::Glyph::primers
  • Bio::Graphics::Glyph::rndrect
  • Bio::Graphics::Glyph::chromosome
  • Bio::Graphics::Glyph::segments
  • Bio::Graphics::Glyph::ruler_arrow
  • Bio::Graphics::Glyph::toomany
  • Bio::Graphics::Glyph::transcript
  • Bio::Graphics::Glyph::transcript2
  • Bio::Graphics::Glyph::translation
  • Bio::Graphics::Glyph::triangle
  • Bio::DB::GFF
  • Bio::SeqI
  • Bio::SeqFeatureI
  • Bio::Das
  • GD

👑 AUTHOR 👑

written by Xiaokang Pan <pan@cshl.org> 🫶

Copyright (c) 2001 BDGP

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty. (so like, read the fine print bestie, it's literally right there 💜)

aaaand that's the whole page 🎀 this was perl v5.30.0, dated 2019-11-25, and it's the Bio::Graphics::Glyph::splice_site(3pm) manpage — mwah, iconic, periodt ✨💖🦋

📦 where this page comes from