Bio::Coordinate(3pm)

💖 Bio::Coordinate — bestie edition 💖

okay so this is Bio::Coordinate from the User Contributed Perl Documentation fam, and she is version 1.007001 ✨

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🧬 NAME

Bio::Coordinate — modules for working with biological coordinates 🦋

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🌸 VERSION

version 1.007001 — yes she has a version, she's that girl 💅

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✨ SYNOPSIS

here's the whole vibe, copy it exactly bestie:

  # create Bio::Coordinate::Pairs or other Bio::Coordinate::MapperIs somehow
  $pair1; $pair2;

  # add them into a Collection
  $collection = Bio::Coordinate::Collection->new;
  $collection->add_mapper($pair1);
  $collection->add_mapper($pair2);

  # create a position and map it
  $pos = Bio::Location::Simple->new (-start => 5, -end => 9 );
  $res = $collection->map($pos);
  $res->match->start == 1;
  $res->match->end == 5;

  # if mapping is many to one (*>1) or many-to-many (*>*)
  # you have to give seq_id not get unrelevant entries
  $pos = Bio::Location::Simple->new
      (-start => 5, -end => 9 -seq_id=>'clone1');

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🌈 DESCRIPTION

so basically, the Bio::Coordinate classes are the ones you call when you're working with all kinds of biological coordinate systems 🧬✨ no cap.

want examples? go peek at Bio::Coordinate::Collection and Bio::Collection::Pair — they're right there, showing you the whole vibe 👑

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🫶 FEEDBACK

💌 Mailing lists

user feedback is literally an integral part of how this module and all the other Bioperl modules evolve, periodt 🌱 so please send your comments and suggestions (preferably) to the Bioperl mailing list. your participation is so much appreciated, fr fr 🥹💖

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

🌷 Support

please direct your usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly 🙈 there are so many experienced and reponsive experts who'll be able to look at the problem and quickly address it — and if you can, please include a thorough description of the problem with code and data examples. the more deets the better, bestie 🫶

🐛 Reporting bugs

report bugs to the Bioperl bug tracking system so we can keep track of the bugs and their resolution — it's giving teamwork 💀✨ bug reports can be submitted via the web:

  https://github.com/bioperl/%%7Bdist%7D

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👑 AUTHOR

Heikki Lehvaslaiho <heikki@bioperl.org> 🌸

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📜 COPYRIGHT

this software is copyright (c) by Heikki Lehvaslaiho.

this software is available under the same terms as the perl 5 programming language system itself 💜

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and that's the whole page bestie!! 🎀 generated by perl v5.32.0, dated 2020-11-24, and it's the Bio::Coordinate(3pm) page from User Contributed Perl Documentation — go forth and map those coordinates, you absolute icon 👑💅✨